Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq82 111 4e-20 seq14 91.5 4e-14 >seq82 Length=657493 Score = 111 bits (122), Expect = 4e-20 Identities = 231/343 (67%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 26640 ACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTG 26699 ||| ||||||||||| || || |||| || | | ||| |||||| | || || Sbjct 205862 ACCTAGCATTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAA 205921 Query 26700 TCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACC 26759 | ||||||||||||||||||| || ||||| ||||||| ||| || | |||||| Sbjct 205922 ACCATTTTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACC 205981 Query 26760 TTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCA 26819 |||||| ||||| |||| |||||||| || | ||| || | || | | ||||| Sbjct 205982 TTTTCGAAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCA 206041 Query 26820 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 26879 || || | || || | |||||||| | ||||| ||| | |||||| || || | Sbjct 206042 TTCAGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAA 206101 Query 26880 TGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCCAA 26939 ||| | || | | | | || | | || ||| | | ||| ||||| || || | Sbjct 206102 TGTCATATTCACTACCG-CATTACCATTAGGCATATAACGAACTTCAGGATCTTGACCTA 206160 Query 26940 GGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 | ||||| | || || |||||||| ||||| || ||||| Sbjct 206161 AATGCCCAATCAGAATAACTTTATTTACACCTCTACTAGCCAT 206203 >seq14 Length=60807478 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 33000 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATACAGATGGATTTCTAAGGG 33059 ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| Sbjct 38780475 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 38780534 Query 33060 CAT 33062 ||| Sbjct 38780535 CAT 38780537 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 33000 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATACAGATGGATTTCTAAGGG 33059 ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| Sbjct 38781980 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 38781921 Query 33060 CAT 33062 ||| Sbjct 38781920 CAT 38781918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129293887303360