Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 >seq8 Length=44809562 Score = 107 bits (118), Expect = 2e-18 Identities = 378/583 (65%), Gaps = 7/583 (1%) Strand=Plus/Plus Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||||| || ||||||||||| || | || |||||||| ||| || ||||| || || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 |||||||| ||||| ||||| ||||| | ||| || |||| | ||| || || Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAG 36833239 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 |||||||| || |||||| | || || || | | | ||||| | ||| | Sbjct 36833240 AAGAATATCCCTTCGACGCACGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGACCCA 36833299 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | || ||||| || |||| | ||| || | | | ||| || || || || Sbjct 36833300 T--CG-ATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 36833356 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || || | | || |||| ||| | || ||||| || | || |||||| Sbjct 36833357 GCGCGGAAGAGATGGTCCCGCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 36833416 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 ||||| |||||||| |||||||| || || ||||| || ||||| ||| || || || Sbjct 36833417 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 36833476 Query 17318 GCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | | || || || || | ||| || || ||||| ||| ||||| |||||| Sbjct 36833477 GAGACCTGGACGTCGGACAT-GAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGA 36833535 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGC 17435 |||||||| || || | | || || ||||| | || |||| | | ||| Sbjct 36833536 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 36833594 Query 17436 GCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTG 17495 |||||| | || | ||| | || ||||| |||| |||||| || ||| | | Sbjct 36833595 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 36833654 Query 17496 CCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| || ||||| | ||| || | | |||||| || ||||| Sbjct 36833655 CCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAA 36833697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517529135580600