Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 5e-13 seq6 84.2 2e-11 >seq8 Length=44809562 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || |||||||| ||||| || || ||||||||||| ||| || |||||||| || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 || ||||| ||||| ||||| ||||| | |||||| |||| |||| || || || Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCG-AGCAGAAGCTACCGGA 36833238 Query 16315 AAAGAATATACCCTCAAC 16332 |||||||| || || || Sbjct 36833239 GAAGAATATCCCTTCGAC 36833256 >seq6 Length=32494073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || |||||||||||||| || || || |||||||| ||| || |||||||| || Sbjct 29608545 ATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 29608604 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 || | ||| ||||| || || ||||| | |||||| |||| |||| || || || Sbjct 29608605 GTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCG-AGCAGAAGCTACCGGA 29608663 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGC 16344 |||||||| || || || | ||||| || Sbjct 29608664 GAAGAATATCCCTTCCACGCAAGCAAACGC 29608693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398130629400