Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq1239 138 2e-28 >seq1239 Length=2566 Score = 138 bits (152), Expect = 2e-28 Identities = 591/918 (64%), Gaps = 31/918 (3%) Strand=Plus/Plus Query 2273 CACCAACTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCT 2332 ||||| | |||||| ||| |||| |||||| ||| |||||||||| | |||| | Sbjct 1447 CACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGACGTT 1506 Query 2333 GTATTTCTCGGTCAGTTTGCGGATGCCATCTGCCTGC-GCGGCAAAGTCCATGCCCTTCC 2391 | | |||| ||| || ||| | |||||| ||| || | | | ||| || Sbjct 1507 GAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACG-TCCCCCGCC 1565 Query 2392 ACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGA 2451 | ||| |||||| || ||||||||||| || | ||| ||||| || | || | Sbjct 1566 AGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAA 1625 Query 2452 CGCACCCGGCGCTGTCGCCAGTGTGTGAC--GGGTCGTAGCCAATCCAGACGGGGCGAGA 2509 ||||| ||| ||||| | || ||| ||||| || || | |||||| ||||| Sbjct 1626 CGCACGTCGCGTCGTCGC--GGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTT 1683 Query 2510 GCCGAACGGATGGTCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCAT 2569 | ||||||| | | | |||| || |||| |||| ||| || || | Sbjct 1684 GTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAATA- 1740 Query 2570 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACAT 2629 |||||||| ||| || || | |||| | | | | ||||| |||| |||||| Sbjct 1741 GCAGCGCTCCAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACAT 1800 Query 2630 AAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAG 2689 ||||| | || ||| ||| || || || | | || | || ||||||||||| Sbjct 1801 GAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAG 1860 Query 2690 GGTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTC 2749 | ||||||| ||||| | |||||| | ||| |||| | || |||||||| || || Sbjct 1861 GTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGG 1920 Query 2750 GCAGAGCTGGCCACCGGCGAGC-GCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAA 2808 ||| | | ||| | || | |||| | ||| | || || ||| | | Sbjct 1921 GCACAACGCGCCGGCATGGATCTGCGCTTCG-CTGG-GCCA----CGGCCCGGCCTTCTT 1974 Query 2809 TACG-GCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCC 2867 | || ||| | ||| |||| |||||| | |||| | ||||| || ||||| Sbjct 1975 TCCGCGCTTG--CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTT 2032 Query 2868 AGCGTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAG 2927 | || ||| || || |||||||| |||| | ||||||||||| | | Sbjct 2033 ACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTG 2092 Query 2928 GCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCG 2987 || || | |||||||||| ||||| ||||||||||| | ||| |||| || | || | Sbjct 2093 GCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGG 2152 Query 2988 CCGTTATGGCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGC------- 3040 |||| | |||||| ||||||||| ||| || |||||| ||| | || Sbjct 2153 CCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGC 2212 Query 3041 --GCCGTTGTTGCCAATGACAATCGGGTCGCCGGTCAGGTCGACGTC-AACCAGT-CGC- 3095 ||||| |||| | || || || | ||||| ||| |||| || ||||| | ||| Sbjct 2213 TTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCG 2272 Query 3096 GCAAACTGTATGATGTATTCGCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAA 3155 || ||| | |||||| ||||||||| | | ||| | || || ||||| ||| Sbjct 2273 GCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAA 2332 Query 3156 ATCTGGTTATGGCCGGTC 3173 |||||||| | |||||| Sbjct 2333 ATCTGGTTGTCCCCGGTC 2350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97872242027940