Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq2 95.1 1e-14 >seq8 Length=44809562 Score = 104 bits (114), Expect = 2e-17 Identities = 249/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | |||||||| | | || || || | || || | || || || || Sbjct 4272773 CAAGGATTTGATCAGCTCCTAGACGTAATCGAAAAGATCAAGAACAATCCTGATGATCGG 4272832 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 || || || ||||| ||||||| || ||| || || |||| || |||||||| Sbjct 4272833 CGTATCATACTATCGGCTTGGAACCCTTCTGATCTCAAGTTGATGGCGCTTCCTCCATGC 4272892 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 |||| ||| ||||| || || || | || || | || || ||| | || ||| | Sbjct 4272893 CACATGTTCGCACAGTTCTATGTGGCGGAAGGGGAGCTCTCATGTCAAATGTATCAGCGT 4272952 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || | ||||||||||||||| || ||||| ||||||||| || | |||||||||| | Sbjct 4272953 TCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTACCTGC 4273012 Query 19110 ATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCA 19169 || |||| ||||| | ||| | || ||||| || ||| || |||||||| Sbjct 4273013 ATGCTAGCTCATGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTCATTGGGGATGCT 4273072 Query 19170 CATATTTACTTGAA-TCATATAGATGCTT-TAAAAGTGCAGCTAGCTCGATCC-CCAAAA 19226 || | || | ||| ||| | || || | | ||| ||| || | |||| |||||| Sbjct 4273073 CACGTGTA-TCGAACTCACGT-GAGGCCTCTCCAAGAGCAACTT-CAGAATCCACCAAAA 4273129 Query 19227 CCTTTTCCT 19235 ||||||||| Sbjct 4273130 CCTTTTCCT 4273138 >seq2 Length=44367670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| |||| ||| ||||||||||||||| || || || | || Sbjct 42352711 ATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGAGAGCTTTCG 42352652 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| ||||| || ||||||||| Sbjct 42352651 TGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCTTCT 42352592 Query 19092 TATGCACTTCTTACCTACAT 19111 || | |||||||| | ||| Sbjct 42352591 TACTCCCTTCTTACATGCAT 42352572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399491608509525