Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8 118 8e-22 seq2 98.7 7e-16 seq9 82.4 6e-11 >seq8 Length=44809562 Score = 118 bits (130), Expect = 8e-22 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101701 ATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATG 101760 ||| | ||||||||| || || ||||||||| || ||||| || |||| | ||||| Sbjct 4273081 ATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAGATCACACACATG 4273022 Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820 ||| | |||||| || | |||||| || |||||||||||| ||||| || | ||||| Sbjct 4273021 AGCTAGCATGCAGGTAAGAAGAGAGTAAGAAGCAATGTTAAACGGCACACCAAGGCCCAT 4272962 Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855 ||| ||||| | ||||||| |||||| || |||| Sbjct 4272961 ATCCGCTGAACGCTGATACATTTGACATGAGAGCT 4272927 >seq2 Length=44367670 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | ||| || || |||||||||||| || || || | Sbjct 42352559 GACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAG 42352618 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAA 101873 |||||||||||||| | ||||||| |||||| ||||||| |||| || || || |||| Sbjct 42352619 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 42352677 Query 101874 ATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAG 101933 | ||| || | || || || || | |||| || ||| ||| |||||||| Sbjct 42352678 ACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCGCCTTAAGGTCAGAAGGATTCCAAG 42352737 Query 101934 CACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 || |||||| |||| | ||| || || ||||| || Sbjct 42352738 CAGACATTATAATCCGCCGATC-GTCAGGATTGTTCTT 42352774 >seq9 Length=3036023 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | ||||| || | ||| ||||| ||||||||||| || || || | Sbjct 55017 GACATGAGCGAGGATGCATGTAAGAAGCGAATATGAGGCAATGTTAAACGGTACACCAAG 54958 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 ||||| || ||||| | ||||||| |||||| ||||||| ||||| |||||||| Sbjct 54957 ACCCATGTCTGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATATGCAACATAAAA 54898 Query 101875 TTG 101877 || Sbjct 54897 CTG 54895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361239995003795