Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 >seq8 Length=44809562 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || ||||| || ||||| | ||| ||||| || || || Sbjct 4273101 AGAGGCCTCACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCA 4273042 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | || || | |||| |||| || || ||||| || ||||| Sbjct 4273041 GGAACAAGATCACACACATGAGCTAGCATGCAGGTAAGAAGAGAGTAAGAAGCAATGTTA 4272982 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || ||||| ||| | || ||||| |||| || || ||||||||||| Sbjct 4272981 AACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCT 4272922 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||||||| |||||||| | | |||||| || || || ||||| Sbjct 4272921 TCCGCCACATAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCAT 4272875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590058028181800