Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq1239 116 8e-22 >seq1239 Length=2566 Score = 116 bits (128), Expect = 8e-22 Identities = 285/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 2098 TCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTC 2157 || || | |||| |||| || || | ||||| | || | || |||||||| |||||| Sbjct 2000 TCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTC 2059 Query 2158 GAGCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTC 2217 |||| | || |||||||| | |||||| | |||| ||| ||||| Sbjct 2060 AGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTG 2119 Query 2218 GGGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAG 2277 ||||||||||| | || |||| ||| | || ||||| | |||||||| |||||| | Sbjct 2120 GGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTG 2179 Query 2278 TTGGTGCCGAGAAAAATCAGTTTTGC---------GCCGTTATTGCCCAGGACAATCGGG 2328 || || |||||| ||||| || ||||| |||| || || || || Sbjct 2180 TTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGA 2239 Query 2329 TCACCGGTCAGGTCAACGTC-AACCA--GACGGGCAAAGGCGATGATGTATTCGCGGAAC 2385 | |||| ||| || | || ||||| | ||| || |||| |||||| ||||||| Sbjct 2240 TTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCTGCGGAAC 2299 Query 2386 ACATACGCCTGTGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCA 2445 || | | ||| | || || ||||| ||||||||||| | ||||| || || Sbjct 2300 ACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCG 2359 Query 2446 CGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATA 2505 || | ||| ||| || || || | ||| || |||||||| || ||||||||| Sbjct 2360 TCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATA 2419 Query 2506 TCGCGGATGCG 2516 | |||||| || Sbjct 2420 TGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107372754895950