Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq2 84.2 2e-11 >seq3 Length=44396707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | ||| ||||| ||||| |||||||| || || || || ||||| Sbjct 19894471 GATAAGGAAGGCATTCCCCCGGATCAGCAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAA 19894412 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||| ||||||||||||| || || |||||||||||||| ||| |||| Sbjct 19894411 GACGGCAGAACCCTGGCCGATTACAACATCCAGAAGGAATCTACTCTCCACTTGGT 19894356 >seq2 Length=44367670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| | || || || ||||| ||| ||| |||| | | Sbjct 25764683 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 25764624 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | || || || ||||| ||||| | || ||||| Sbjct 25764623 GACACGATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAG 25764564 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || |||||||| || || || |||||||||||| || || |||| || |||||| Sbjct 25764563 CAGAGGCTTATCTTCGCCGGAAAGCAATTGGAAGATGGCAGGACCTTGGCTGACTACAAT 25764504 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||| ||||| |||||| |||| Sbjct 25764503 ATCCAGAAGGAGTCTACGCTTCACTTGGT 25764475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784058238630