Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq2 84.2 2e-11 >seq8 Length=44809562 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 ||| |||||| ||||| | ||| |||| | ||| | ||||||||| || | | Sbjct 4273114 AAGTTGCTCTTGGAGAGGCCTCAC-GTGAGTTCGATACACGTGAGCATCCCCAATGACAT 4273056 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | ||||| || |||||||| | |||| ||||| || | ||| || || | ||||| | Sbjct 4273055 GGATAAAATCACCAGGAACAAGATCACACACATGAGCTAGCATGCAGGTAAGAAGAGAGT 4272996 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 | |||||||||||| ||||| || || |||||||| ||||| | ||||| | |||| Sbjct 4272995 AAGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATTTGAC 4272936 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTG 97241 | || |||| || || |||||| ||||| Sbjct 4272935 ATGAGAGCTCCCCTTCCGCCACATAGAACTG 4272905 >seq2 Length=44367670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 97119 GACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAG 97178 ||| || |||| || || || | || || || ||||||||||||||| || || || Sbjct 42352559 GACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAG 42352618 Query 97179 TCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATAAA 97237 |||||||||||||| | ||||| | ||||| ||||||| |||| || || || |||| Sbjct 42352619 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 42352677 Query 97238 ACTGA 97242 ||||| Sbjct 42352678 ACTGA 42352682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773243735650