Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 9e-12 >seq8 Length=44809562 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || ||||||||||| || ||| | ||| | || | Sbjct 30326431 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTGGAGAACTCT 30326490 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || ||||| || || ||||| || || || || || Sbjct 30326491 GACACGATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAG 30326550 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || || || || ||||| | |||||| |||| || | | ||||| ||| Sbjct 30326551 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACGCTTGCGGATTACAAT 30326610 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || | || | ||| |||| |||||||| Sbjct 30326611 ATTCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTCTACGTGGTGGTAT 30326660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755431967056000