Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq1734 102 3e-17 >seq1734 Length=1503 Score = 102 bits (112), Expect = 3e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 ||||| |||||||| ||| || ||||| || || |||| | ||| | |||| Sbjct 871 TGAAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCC 812 Query 48974 GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCA 49033 |||||| || || | |||||||| ||| | ||| | || ||||||||||| | Sbjct 811 AGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGA 752 Query 49034 TCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACA 49093 ||||||| |||||||||||| | |||||||| || || || || ||||| |||| ||| Sbjct 751 TCGAGCAGGACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACA 692 Query 49094 GCGATAAGAAGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 || | ||||| | | ||| | | || | ||| | ||| |||| |||| ||| | Sbjct 691 CTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTA 632 Query 49154 GCGT 49157 ||| Sbjct 631 CCGT 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180436146716520