Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 9e-12 seq3 86.0 9e-12 >seq5 Length=39062406 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | ||| ||||| || ||||| ||||| | | Sbjct 24281197 CCACCACGAAGCCTGAGGACCAAGTGGAGAGTCGATTCCTTCTGGATATTGTAATCAGCA 24281138 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || || || ||||| || || || | || ||||||||||||||| Sbjct 24281137 AGGGTCCTGCCATCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 24281078 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 24281077 ATGCCCTCCTTATCCTG 24281061 >seq3 Length=44396707 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | ||| ||||| || ||||| ||||| | | Sbjct 21554713 CCACCACGAAGCCTGAGGACCAAGTGGAGAGTCGATTCCTTCTGGATATTGTAATCAGCA 21554772 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || || || ||||| || || || | || ||||||||||||||| Sbjct 21554773 AGGGTCCTGCCATCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 21554832 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 21554833 ATGCCCTCCTTATCCTG 21554849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743502746566400