Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq2 89.7 4e-13 seq5 86.0 5e-12 >seq3 Length=44396707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || ||||| || || |||||||| |||||| Sbjct 19894338 CCACCACGGAGCCTGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCC 19894397 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||||| || || || || ||||||| ||||| |||||| ||| Sbjct 19894398 AGGGTTCTGCCGTCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 19894457 Query 18219 ACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 19894458 ATGCCTTCCTTATC 19894471 >seq2 Length=44367670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || || || |||||||| ||| Sbjct 25764457 CCACCACGGAGCCTGAGAACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAGTCAGCC 25764516 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||| || || || ||||||| || || |||||| || Sbjct 25764517 AAGGTCCTGCCATCTTCCAATTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 25764576 Query 18219 ACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 25764577 ATGCCTTCCTTATC 25764590 >seq5 Length=39062406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || || || ||||||||||| | | || | |||| Sbjct 24282094 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 24282035 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 24282034 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 24281975 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| |||||| | ||| ||||| |||||| | Sbjct 24281974 TGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGTGTGATGGTC 24281915 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || || ||||| ||||| Sbjct 24281914 TTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 24281883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332233816025