Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 114 3e-20 seq8 100 6e-16 >seq2 Length=44367670 Score = 114 bits (126), Expect = 3e-20 Identities = 146/198 (74%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| || ||| | |||| || ||| | || ||||||||| || ||| | Sbjct 42352773 AGAACAATCCTGACGATCGGCGGATTATAATGTCTGCTTGGAATCCTTCTGACCTTAAGG 42352714 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 ||||| |||||||||||||||||| |||||| ||||| || || |||||||| | | Sbjct 42352713 CGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGAGAGCTTT 42352654 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 42352653 CGTGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCTTTTAACATTGC 42352596 Query 35695 ATCATACTCTCTTCTGAC 35712 || ||||| ||||| || Sbjct 42352595 TTCTTACTCCCTTCTTAC 42352578 >seq8 Length=44809562 Score = 100 bits (110), Expect = 6e-16 Identities = 143/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | |||| ||||| ||| ||||| | Sbjct 4272813 AGAACAATCCTGATGATCGGCGTATCATACTATCGGCTTGGAACCCTTCTGATCTCAAGT 4272872 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| || || || |||||||| | || || | | Sbjct 4272873 TGATGGCGCTTCCTCCATGCCACATGTTCGCACAGTTCTATGTGGCGGAAGGGGAGCTCT 4272932 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| |||||| ||| || | || ||||| || || ||||| Sbjct 4272933 CATGTCAAATGTATCAGCGTTCAGCGGATATG--GGCCTTGGTGTGCCGTTTAACATTGC 4272990 Query 35695 ATCATACTCTCTTCTGAC 35712 || ||||||||||| || Sbjct 4272991 TTCTTACTCTCTTCTTAC 4273008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989551731830475