Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq756 545 5e-151 seq1239 161 2e-35 >seq756 Length=6281 Score = 545 bits (604), Expect = 5e-151 Identities = 768/1067 (72%), Gaps = 30/1067 (3%) Strand=Plus/Plus Query 15015 ACGCTGGCCAACTCCGGCGTCACCGCCGGGACCTACGCGAAAGTCACGGTGAACGCCAAA 15074 || ||||| |||||||||| ||||| || |||||| ||||||||| || ||||||||| Sbjct 1870 ACCCTGGCGGACTCCGGCGTAACCGCTGGCACCTACCCGAAAGTCAACGTAAACGCCAAA 1929 Query 15075 GGACTGGTTAC---CGGAGCCACTGGGCTTGTAG-CGAGTGATATTCCGGCCCTTGATGC 15130 || |||||||| ||| || || |||| | || || | || ||||| || | Sbjct 1930 GGCCTGGTTACAAGCGGGGC----GGCCTTGACGGCGGCGGACCTGCCCGCCCTCGACGT 1985 Query 15131 CGGAAAAATCACCTCCGGCATCTTACCTGCTGCCAGAGGCGGTACCGGCAATGGTATTGG 15190 ||| || ||||| |||||||| | || ||| | ||||| || ||||| | || || Sbjct 1986 CGGCAAGATCACTACCGGCATCCTGCCCCTGGCCCGTGGCGGCACGGGCAACGCCATCGG 2045 Query 15191 TCAGGCTGCAACGGCGGTCAAACTCGTCGCCCCTCGTACGATCTACCTCGGTGGGGACGT 15250 |||||||| |||||||||||||| | ||||||| || | ||| |||||| | Sbjct 2046 CCAGGCTGCGACGGCGGTCAAACTGGCATCCCCTCGAACACTGGCAATCGCTGGGGATGC 2105 Query 15251 CAGCGGCTCGACAACGTTCGACGGTAGCGCGAACGCTGGAATCACGGTCACGTTGGCGAA 15310 || |||| | | ||||| || ||||| ||||| | || ||||| ||| |||| || Sbjct 2106 CACCGGCAGCGCTGCATTCGATGGCAGCGCAAACGCCAGCATTACGGTTACGCTGGCCAA 2165 Query 15311 CTCGGGTGTAAATGCCGGCTCCTACCCCAAAGTCACTGTTAACGCCAAGGGGCTGGTTAC 15370 | ||||| | |||| ||||| |||| |||| || ||| ||||||| || || | Sbjct 2166 TACCGGTGTCGCCGACGGCACCTACACCAAGGTCAGGGTAAACCCCAAGGGTCTAGTCAT 2225 Query 15371 CGGTGGCGGTGGCCTGACGGCAGCAGACATTCCTGCGTTGGATGCGTCGAAGATTGCGAC 15430 ||||| || || | || |||||||| | |||| || ||||| || || | Sbjct 2226 CGGTGCAACCACGCTTACTACCGCCGACATTCCCTCTCTGGACGCCTCGAAAGTTACGTC 2285 Query 15431 CGGTCGACTCGATCTTGAACGCTTGCCGTTGGTGTCGCAGGGACTGGCCACGGCAGTGCA 15490 || ||| || ||| |||| | | | || || || ||| ||| ||| Sbjct 2286 GGGCATGTTCGCCGATGCCCGCCTGCCCTGGTACGCACAAGGGCTATGCAC--CAGCGCA 2343 Query 15491 TACCAG-CGTTGATCCC-AACTCGGTGGTCATTCCGCTGGTACTGACCAATCACGCGAAT 15548 | | || | ||| ||| | | ||| ||||| | || || ||||||| ||| Sbjct 2344 CCCAACACGACGGACCCGAACACCACGAACATCCCGCTCATCCTCACGAATCACGAGAAC 2403 Query 15549 GGCCCAGTGGCTGGCCGCTACTACTACATCCAGACGATGTTCTATCCGACCGTCGAA--G 15606 || || | | || | || | ||| |||||||||||| | || | ||| || | | Sbjct 2404 GGTCCGATTCCGGGGCAGTATTTCTATATCCAGACGATGATGTA--CAACCAGCGCAACG 2461 Query 15607 GCAACGCGACGCAGATTGCAACCGGCTATGCCGGCGTG-GCTGACATGTACGTTCGTTAT 15665 |||||||| ||||||||| |||| || |||| || || ||||| || || || Sbjct 2462 GCAACGCGGGGCAGATTGCCGTGCGCTACGC-GGCGAACGCCGAAATGTATGTGCGCTAC 2520 Query 15666 GCCTACGCTTCCCCCGCAACGACCGATTCGTCCAAGCGGGAGTGGTCAGCCTGGGTCCGC 15725 |||| | | ||||| | || || ||| ||||| |||||| ||| Sbjct 2521 ATGTACGA--CGTCGGCAACAAGCG---CG-------GGGTCTGGTCGGCCTGGAAACGC 2568 Query 15726 TGCGATCTGGGCGGTGCCTTCGCACACGCGCCCGATGGCGAGCTGGGTGGCTATGTCAAT 15785 |||||| |||||||| | || || | | | | |||||||| ||||| || ||||| Sbjct 2569 TGCGATGTGGGCGGTTCATTTGCCAAAGAGGCGGATGGCGAACTGGGGGGTGGGGTCAAC 2628 Query 15786 CTGGACTCGATGATTGCTTCGGGCTGGTGGCATCAACCGTTCACCGCAAACGCCAAGAAC 15845 || ||| | |||||||| || || ||||||||||||||||||| ||| |||||||||||| Sbjct 2629 CTAGACACCATGATTGCCTCTGGGTGGTGGCATCAACCGTTCAGCGCGAACGCCAAGAAC 2688 Query 15846 GGGGCGAACTATCCCGTAGGCGAAGCAGGTTTATTGACGGTTCATGCTCCAACCGCCTCG 15905 || ||||||||||||| || || || ||||| |||| || || || || || || || Sbjct 2689 GGCACGAACTATCCCGTGGGAGAGGCCGGTTTGCTGACCGTCCACGCCCCCACTTCCACG 2748 Query 15906 ATGATCTATCAGACCTATCGTGGCTACGCCGCCGGCGGTCTGTACTGGCGCTGCCGCTAC 15965 ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 2749 ATGATTTATCAGACTTACCGTGGCTACGCCGCCGGCGGTCTGTACTGGCGCTGCCGCTAC 2808 Query 15966 AACGGAACATGGTCAGCTTGGTATCGTGCATGGGACTCCGGCAACTTCAACCCGGCCAAC 16025 ||||| || |||||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct 2809 AACGGCACCTGGTCAGCATGGTATCGCGCATGGGACTCCGGCAACTTCAACCCTGCCAAC 2868 Query 16026 TATGTGGCCAAGTCGGAATACTCCTGGGCGTCCTTGCCTGGGAAGCC 16072 || |||||||||||||||||||||||||||||||| || |||||||| Sbjct 2869 TACGTGGCCAAGTCGGAATACTCCTGGGCGTCCTTACCAGGGAAGCC 2915 Score = 165 bits (182), Expect = 2e-36 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 16631 CTGGCAACGATCGAGCGCGATTGGCGCGACCGCCAGCTCGACGACACCGACGCCCTGGTC 16690 ||||| |||| ||||||| ||||| || | ||| || |||| ||||||||||||||| Sbjct 3552 CTGGCGGCGATAGAGCGCGCCTGGCGGGATCACCAACTGGACGCCACCGACGCCCTGGTG 3611 Query 16691 GCACGTCACCGCGACGAGCTCGAGGTTGGTACCACGACGCTCAGCACTGAGCAGTACCAG 16750 ||||| |||||||||||| |||||| || ||| || || | | |||||||||||| Sbjct 3612 GCACGCCACCGCGACGAGATCGAGGACGGCGACACTACCCTGACCGGCGAGCAGTACCAG 3671 Query 16751 GCGCTGCAGGCGTACCGCCGCCAACTGCGCGACTGGCCGGAGTCCGGTGAGTTTCCGCTC 16810 || |||||||| ||||| ||| ||||| |||||||| ||| || || |||||||| Sbjct 3672 GCACTGCAGGCCTACCGGCGCACCCTGCGAGACTGGCCCGAGCAGGGCGAATTTCCGCTT 3731 Query 16811 GCAGAACACCGGCCGGCCGCACCGGACTGGCTCG 16844 || || ||||| || ||| |||| ||||||| Sbjct 3732 GCGGAGCACCGCCCCAGCGCCCCGGCGTGGCTCG 3765 >seq1239 Length=2566 Score = 161 bits (178), Expect = 2e-35 Identities = 725/1131 (64%), Gaps = 51/1131 (5%) Strand=Plus/Plus Query 2656 TCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACCAGGCCTTCATG 2715 |||||||| ||||| || |||||| ||| | || |||||| | |||||| | Sbjct 1325 TCGGTCCAACCGGCATCCCATTCGATGCGCTTGCCCTGGATCACGTCCTGGGCCTTGAGC 1384 Query 2716 ACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGCGCACCCCCGGG-AAGAACTG 2774 |||| ||||| |||| | |||| |||| | | | ||| ||| ||||| | Sbjct 1385 ACCAGGGCATTCTTCGCCTCCAGGCTGTAG-TGAATCGGAGTAGCCCGGGGGAAGAAGTC 1443 Query 2775 GCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGGTGTCGACGCCGATGTAGGTGAC 2834 |||||| | || || | || | |||||| |||||| |||||||| ||| Sbjct 1444 TTTCACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGAC 1503 Query 2835 CCAGTAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGAAGTCCTTGCCGCG 2894 | |||||| | || ||| ||| || ||||| | | ||| | | || || Sbjct 1504 GTTGAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCG 1563 Query 2895 GAATTGATGGCGCTCCAGCACGCGGAACTTGCCGCCCGGTACCGCCGGAGGCGCCACCAC 2954 | || |||||| | ||||||||||||||||| || || || || || || Sbjct 1564 CCAGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGAC 1623 Query 2955 CACCAGACCCGCGGTGTCGCCCGTCTCGGC-GGGGTCATAGCCCAGCCACACCTGGCGAT 3013 || |||| ||||| || ||| | ||||||||| || ||||| ||| |||| | Sbjct 1624 AACGCACGTCGCGTCGTCGCGGGT-TCGACTGGGGTCATACCCGAGCCAGACCGGGCGGT 1682 Query 3014 CACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACAGGTCCCAGCTATCGA 3073 ||||||||||| | | ||| | |||||| | ||| ||| || || ||| Sbjct 1683 TGTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCA---GTCCATAGGCCCAAG---TCGG 1736 Query 3074 CCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTC--GTCGACGAACTG 3131 ||| ||| ||| |||||| | ||| ||| | || ||||| ||||| Sbjct 1737 AATAGCAGCGCTCCAGGTCGGTCAAGGCGAA--TGCAGCCTGGGTGCTGTCGATGAACTT 1794 Query 3132 GCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCAGCTCGTCGATGTC 3191 |||||| | ||| | | ||| ||| |||||||||| || |||| || | ||| Sbjct 1795 GCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTC 1854 Query 3192 GAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGGCGCCAGATGCG 3251 |||||| | |||||| | ||| ||| || | || |||| || || |||||| | Sbjct 1855 GAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCC 1914 Query 3252 GTCCTCGCACAGT-CGCC--CTTGCTGCAGGGCGTCA-TGACTTACGTC--GATCTTGAT 3305 |||| ||||| |||| | || | | || || || ||| | | ||| | Sbjct 1915 GTCCGGGCACAACGCGCCGGCATGGATCTGCGCTTCGCTGGGCCACGGCCCGGCCTTCTT 1974 Query 3306 GCGATCGGCGGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGTGTAGGCCTC 3365 || ||| ||||| ||| ||| |||||| |||||| | | || |||| Sbjct 1975 ----TCCGCG-----CTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTG 2025 Query 3366 ATGCGCCATCGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATC----G 3421 |||| | || |||||||| |||||||||||| |||| | ||| ||||| | Sbjct 2026 GTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCA---CTT-TGCATGCGAGG 2081 Query 3422 CCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAGAACTCGTCGA 3481 |||| ||||||| ||| | | ||||| || ||| ||| ||||||| | ||||||| Sbjct 2082 CCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGA 2141 Query 3482 AGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGAGGAAGTGCAATT 3541 ||||| || ||||||||||| ||| || || ||| || ||| || ||| || Sbjct 2142 TGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTT 2201 Query 3542 CCGC---------GCCG---TTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCTA 3589 |||| |||| || || |||||| || | ||| ||| |||| | | | Sbjct 2202 CCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGA 2261 Query 3590 CCGCATCGCGC-GCGAAGGCCTGGATATACGCCTTGAAGATGTGCGCTTGGGCCTTGCTG 3648 | ||| |||| ||||| || ||| || ||| | | | ||||| ||| Sbjct 2262 AC-CATTGCGCGGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTC 2320 Query 3649 GCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGGGCG 3708 || |||||||| ||||||||| ||| || || ||||| || | ||| ||| |||| Sbjct 2321 GCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCG 2380 Query 3709 AAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGCGGGTTCGC 3759 |||||| | || |||||||| |||||||| || || |||| | ||| Sbjct 2381 AAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCGC 2431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113730962733180