Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq8 132 6e-26 seq7 118 1e-21 seq2470 105 8e-18 seq3 105 8e-18 >seq6 Length=32494073 Score = 143 bits (158), Expect = 3e-29 Identities = 259/375 (69%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || ||||| ||||||||||| ||||||||||| || | ||||| || || Sbjct 29608545 ATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 29608604 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 ||||| || ||||| || |||||||| || ||||| || || || ||| ||||| Sbjct 29608605 GTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAG 29608664 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755 ||||| || ||||| || |||||| || | | ||||| || | ||| ||| | Sbjct 29608665 AAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGAGA 29608720 Query 33756 T--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | || |||||| | ||||| | ||||||||| || || || ||||| || || Sbjct 29608721 TCCGTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGAT 29608780 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 || ||||||| | | || || |||| || | |||||||| | || ||||| Sbjct 29608781 CGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGACT 29608840 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||| || || || ||||| || || || ||||| || |||||||| | ||||| Sbjct 29608841 GTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGGGCCTC 29608900 Query 33932 GGTAATCTGCACTTC 33946 || | |||||| || Sbjct 29608901 GGAGACCTGCACGTC 29608915 >seq8 Length=44809562 Score = 132 bits (146), Expect = 6e-26 Identities = 403/613 (66%), Gaps = 10/613 (2%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || ||||||||||||||||| || |||||||| || | ||||| || || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || | || ||||| || || ||||| || ||||| || || || ||| ||||| Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAG 36833239 Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCGCTG 33752 ||||| || ||||| || ||| || ||||| | | ||||| || || | || | Sbjct 36833240 AAGAATATCCCTTCGAC-GCACGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGAC-- 36833296 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 ||| |||||| | ||||| | ||||||||| || || || || || || || Sbjct 36833297 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 36833356 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || ||||||| || || || | || || | || || || | || || || Sbjct 36833357 GCGCGGAAGAGATGGTCCCGCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 36833416 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| || || || ||||| || || || ||||| || |||||||| | |||||| Sbjct 36833417 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 36833476 Query 33933 GTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | | ||| || || | ||| || || || | ||| || || ||||| || Sbjct 36833477 GAGACCTGGACGTC-GGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGA 36833535 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 34050 ||| || || || || | || ||||| || || | || || | ||| || || | Sbjct 36833536 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 36833594 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 36833595 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 36833654 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 34170 |||| || ||||| | |||||| | | | |||||||||||||| || ||||| | || Sbjct 36833655 CCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAATCTGTCTG 36833714 Query 34171 GATTTGGTGCAAG 34183 | |||| | ||| Sbjct 36833715 GGGTTGGGGTAAG 36833727 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 25053513 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 25053572 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 25053573 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 25053632 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||||| |||| | | |||||| | ||| ||| | || | Sbjct 25053633 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 25053692 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 25053693 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 25053740 >seq7 Length=41685129 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | ||||||||||| || ||||||||| | ||| | || || Sbjct 5826531 AGTTCCTGAATTGAAGAGAGTAGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 5826472 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | |||||| || || || || || ||||| || || | ||| | ||| | Sbjct 5826471 GTAAGTTTGAATAGCGGAATCAATGTCTTGTTTGTGAATCCCAACAGAGACCCTCATGAG 5826412 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||||| | | ||| | ||| || | ||| ||| | || | Sbjct 5826411 CATGTGCTGAGGCCTTTCAACAACTATCCCGTTGACTTTTAAGAGGTATGATCTCTCAAG 5826352 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 5826351 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 5826304 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 36269583 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 36269524 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||| ||| | ||||| || || || || | ||| | ||||| || || || ||| Sbjct 36269523 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 36269464 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 36269463 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATAT 36269404 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 36269403 TCCCTCAATGCTATCATCCTTCATG 36269379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| |||| |||| | || | || |||||||| |||||| Sbjct 5826853 TCCTCCTTGGTCAACATAACGAGCAGTGTCATTAAATACACGCAGCATTGGAACAATACC 5826794 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || ||||||||| || || || | |||| ||||| || || |||||| Sbjct 5826793 ATTAGAAGCACCATTGGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 5826734 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || |||| || | ||| || ||| || || ||||| || Sbjct 5826733 AACACCGATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 5826674 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 5826673 CCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5826632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | || || | || ||||| || || ||||||||| | ||| | | || Sbjct 36269254 AGTTCCTGAGTTGAAGAGAGTGGGAGACGCATGAGTAAACCATCGCTGAGACATCAAATG 36269195 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || || ||| || ||||| || || | || | ||| | Sbjct 36269194 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCAACAGAAACCCTCATGAG 36269135 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 36269134 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCGAG 36269075 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| || ||| || || || ||||| || Sbjct 36269074 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 36269027 >seq2470 Length=950868 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 185421 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 185362 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 185361 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 185302 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||||| |||| | | |||||| | ||| ||| | || | Sbjct 185301 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 185242 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 185241 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 185194 >seq3 Length=44396707 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 7812074 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 7812133 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 7812134 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 7812193 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||||| |||| | | |||||| | ||| ||| | || | Sbjct 7812194 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 7812253 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 7812254 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 7812301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797563927600