Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 125 9e-24 seq8 123 3e-23 seq7 113 6e-20 seq2470 96.9 5e-15 seq3 96.9 5e-15 >seq6 Length=32494073 Score = 125 bits (138), Expect = 9e-24 Identities = 241/349 (69%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || ||||| |||||||| || ||||||||||| || | |||||||| || Sbjct 29608545 ATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 29608604 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 ||||| || ||||| || |||||||| || ||||| || || || ||| | | | || || Sbjct 29608605 GTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGA 29608663 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330 ||||| || ||||| || ||||| || | | ||||| || | ||| ||| Sbjct 29608664 GAAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGAG 29608719 Query 36331 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 || || |||||| | ||||| | ||||||||| || || || || ||||| | Sbjct 29608720 ATCCGTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGA 29608779 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | || ||||||| | | || || |||| || | || ||||| | || |||| Sbjct 29608780 TCGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGAC 29608839 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 | ||||| || || || ||||| || || || || || || |||||||| Sbjct 29608840 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAA 29608888 >seq8 Length=44809562 Score = 123 bits (136), Expect = 3e-23 Identities = 385/586 (66%), Gaps = 10/586 (2%) Strand=Plus/Plus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || |||||||||||||| || || |||||||| || | |||||||| || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 || | || ||||| || || ||||| || ||||| || || || ||| | | | || || Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGA 36833238 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCACTG 36328 ||||| || ||||| || ||| ||||| | | ||||| || || | || || Sbjct 36833239 GAAGAATATCCCTTCGACGCACGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGAC-- 36833296 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 ||| |||||| | ||||| | ||||||||| || || || || ||||| || Sbjct 36833297 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 36833356 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || ||||||| || || || | || || | || || || | || || || Sbjct 36833357 GCGCGGAAGAGATGGTCCCGCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 36833416 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || || || ||||| || || || || || || |||||||| | |||||| Sbjct 36833417 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 36833476 Query 36509 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | | ||| || || | ||| || || || | ||| || || |||||||| Sbjct 36833477 GAGACCTGGACGTC-GGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGA 36833535 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTAT 36626 ||| || || || || | || ||||| || || | || | | ||| || || | Sbjct 36833536 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 36833594 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 36833595 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 36833654 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 |||| || ||||| | |||||| | | | ||||| ||||| || || Sbjct 36833655 CCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAACAT 36833700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 25053513 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 25053572 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 25053573 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 25053632 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 25053633 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 25053692 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 25053693 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 25053740 >seq7 Length=41685129 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 36269583 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 36269524 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 || ||||| ||||| || || || || ||||| | ||||| || || || ||| Sbjct 36269523 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 36269464 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | |||||||||||| || |||| || | ||| || ||| || |||||||| || Sbjct 36269463 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATAT 36269404 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||| ||||| Sbjct 36269403 TCCCTCAATGCTATCATCCTTCATG 36269379 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||| || | ||||||||||| || ||||||||| | ||| | || || Sbjct 5826531 AGTTCCTGAATTGAAGAGAGTAGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 5826472 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | |||||| || || || || || ||||| || || | ||| | ||| | Sbjct 5826471 GTAAGTTTGAATAGCGGAATCAATGTCTTGTTTGTGAATCCCAACAGAGACCCTCATGAG 5826412 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | | ||| | ||| || | ||| ||| | || | Sbjct 5826411 CATGTGCTGAGGCCTTTCAACAACTATCCCGTTGACTTTTAAGAGGTATGATCTCTCAAG 5826352 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 5826351 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 5826304 >seq2470 Length=950868 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 185421 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 185362 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 185361 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 185302 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 185301 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 185242 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 185241 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 185194 >seq3 Length=44396707 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 7812074 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 7812133 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 7812134 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 7812193 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 7812194 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 7812253 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 7812254 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 7812301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151861877800