Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq8 84.2 2e-11 >seq2 Length=44367670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || |||| ||| || |||||||| || || || || Sbjct 42352559 GACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAG 42352618 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 42352619 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCAACGTAAAA 42352678 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| | ||||| | || ||||| || Sbjct 42352679 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCGCCTTAAGGTCAGAAGGATTCCAAGC 42352738 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || |||||||||| Sbjct 42352739 AGACATTATAATCCGCCGATCGT 42352761 >seq8 Length=44809562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 21036 GCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGAC 21095 || ||||||||||| || || |||||||| || || || | ||| |||| || || || Sbjct 4272990 GCAATGTTAAACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATTTGACATGAG 4272931 Query 21096 AGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGC 21155 |||||||| ||||| || ||||| || | ||| || ||||| || |||||| | Sbjct 4272930 AGCTCCCCTTCCGCCACATAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCATCAAC 4272871 Query 21156 GCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 ||| || | |||||||| || | | | ||| |||||||| Sbjct 4272870 TTGAGATCAGAAGGGTTCCAAGCCGATAGTATGATACGCCGATC 4272827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427762731591600