Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 150 3e-31 seq8 149 9e-31 seq7 113 6e-20 seq2470 105 1e-17 seq3 105 1e-17 >seq6 Length=32494073 Score = 150 bits (166), Expect = 3e-31 Identities = 416/626 (66%), Gaps = 15/626 (2%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || ||||| ||||||||||| ||||||||||| || || |||||||| || Sbjct 29608545 ATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 29608604 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 ||||| || ||||| || |||||||| || ||||| || || || ||| || || || Sbjct 29608605 GTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGA 29608663 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 ||||| || ||||| || ||||| || || | ||||| || | ||| ||| Sbjct 29608664 GAAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGAG 29608719 Query 50133 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || || |||||| | ||||| | ||||||||| || || || ||||| || | Sbjct 29608720 ATCCGTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGA 29608779 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | || ||||||| | | || || |||| || | |||||||| | || |||| Sbjct 29608780 TCGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGAC 29608839 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || || || ||||| || || || ||||| || |||||||| | |||| Sbjct 29608840 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 29608899 Query 50309 CGGTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 ||| | |||||| || | ||| || || || | || || || || ||||| Sbjct 29608900 CGGAGACCTGCACGTC-GGACATGAACCGAGAGGCGAGGTTCTCGAGGACGATCCCGTCG 29608958 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG--TTTTTCGTTGGGTGTTAGTT 50425 ||| || || || || | || ||||| | || || | || | | || | || Sbjct 29608959 GAGGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGTGGCGCTCTCCGTCGCTGAGATTT 29609018 Query 50426 T-ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 | | ||| || | |||| || | || ||||| || | ||||| || || || Sbjct 29609019 TCCTCCCAGTCGCGGGGGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCT 29609078 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 || || || || ||||| | |||||| | | | || ||||| ||||| || ||||| Sbjct 29609079 TCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACATGCAGAATCTG 29609138 Query 50545 TTTGGATTTGGTGCAAGGATCGGTTC 50570 | ||| |||| | |||| ||| || Sbjct 29609139 TCTGGGGTTGGGGTCAGGAGCGGCTC 29609164 >seq8 Length=44809562 Score = 149 bits (164), Expect = 9e-31 Identities = 412/622 (66%), Gaps = 10/622 (2%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || ||||||||||||||||| || |||||||| || || |||||||| || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || | || ||||| || || ||||| || ||||| || || || ||| || || || Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGA 36833238 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTGGCGCTG 50130 ||||| || ||||| || || ||||| || | ||||| || || |||| | Sbjct 36833239 GAAGAATATCCCTTCGACGCACGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGAC-- 36833296 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 ||| |||||| | ||||| | ||||||||| || || || || || || || Sbjct 36833297 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 36833356 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || ||||||| || || || | || || | || || || | || || || Sbjct 36833357 GCGCGGAAGAGATGGTCCCGCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 36833416 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || ||||| || || || ||||| || |||||||| | |||||| Sbjct 36833417 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 36833476 Query 50311 GTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | | ||| || || | ||| || || || | ||| || || |||||||| Sbjct 36833477 GAGACCTGGACGTC-GGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGA 36833535 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTAT 50428 ||| || || || || | || ||||| || || || || | | ||| || || | Sbjct 36833536 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 36833594 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 36833595 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 36833654 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 |||| || ||||| | |||||| | | | |||||||||||||| || ||||| | || Sbjct 36833655 CCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAATCTGTCTG 36833714 Query 50549 GATTTGGTGCAAGGATCGGTTC 50570 | |||| | ||| | ||| || Sbjct 36833715 GGGTTGGGGTAAGAAGCGGCTC 36833736 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||||| | || |||||||| || ||||||||| | ||||| | | Sbjct 25053513 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 25053572 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 25053573 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 25053632 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| || | |||||| | ||| ||| | || | Sbjct 25053633 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 25053692 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 25053693 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 25053740 >seq7 Length=41685129 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| |||| |||| | || | || |||||||| |||||| Sbjct 5826853 TCCTCCTTGGTCAACATAACGAGCAGTGTCATTAAATACACGCAGCATTGGAACAATACC 5826794 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || | ||||||||| || || || |||||| ||||| || || |||||| Sbjct 5826793 ATTAGAAGCACCATTGGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 5826734 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || |||| || | ||| || ||| || |||||||| || Sbjct 5826733 AACACCGATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 5826674 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || ||||||||||| ||||| | ||||| ||||| Sbjct 5826673 CCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5826632 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 36269583 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 36269524 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 || ||||| ||||| || || || || ||||| | ||||| || || || ||| Sbjct 36269523 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 36269464 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||||||||| || |||| || | ||| || ||| || |||||||| || Sbjct 36269463 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATAT 36269404 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| ||||||||||| ||||| Sbjct 36269403 TCCCTCAATGCTATCATCCTTCATG 36269379 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | ||||||||||| || ||||||||| | ||||| || || Sbjct 5826531 AGTTCCTGAATTGAAGAGAGTAGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 5826472 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | |||||| || || || || || ||||| || || | ||| | ||| | Sbjct 5826471 GTAAGTTTGAATAGCGGAATCAATGTCTTGTTTGTGAATCCCAACAGAGACCCTCATGAG 5826412 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | | || | ||| || | ||| ||| | || | Sbjct 5826411 CATGTGCTGAGGCCTTTCAACAACTATCCCGTTGACTTTTAAGAGGTATGATCTCTCAAG 5826352 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 5826351 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 5826304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | || || | || ||||| || || ||||||||| | ||||| | || Sbjct 36269254 AGTTCCTGAGTTGAAGAGAGTGGGAGACGCATGAGTAAACCATCGCTGAGACATCAAATG 36269195 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || || ||| || ||||| || || | || | ||| | Sbjct 36269194 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCAACAGAAACCCTCATGAG 36269135 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || || | |||||| | ||| ||| | || | Sbjct 36269134 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCGAG 36269075 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| || ||| || || || ||||| || Sbjct 36269074 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 36269027 >seq2470 Length=950868 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||||| | || |||||||| || ||||||||| | ||||| | | Sbjct 185421 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 185362 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 185361 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 185302 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| || | |||||| | ||| ||| | || | Sbjct 185301 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 185242 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 185241 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 185194 >seq3 Length=44396707 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||||| | || |||||||| || ||||||||| | ||||| | | Sbjct 7812074 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 7812133 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 7812134 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 7812193 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| || | |||||| | ||| ||| | || | Sbjct 7812194 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 7812253 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 7812254 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 7812301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245950073800