Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5 113 3e-20 seq3 100 2e-16 seq6 91.5 1e-13 seq2 89.7 4e-13 >seq5 Length=39062406 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||| || | ||| ||||||||| | |||||| || | Sbjct 6898343 GCCTCCACGCAGACGCAACACCAAGTGAAGCGTGGACTCCTTTTGGATATTGTAGTCAGC 6898284 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| |||| || | || |||||||| || ||||| | ||| || || | || Sbjct 6898283 CAAGGTACGACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGG 6898224 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| || || || |||| | ||||| || ||| |||||| ||| ||||| Sbjct 6898223 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCG-GAGCTCTCGA 6898165 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || || |||||||| || | || || ||||| || ||||| Sbjct 6898164 CCTCTAGAGTGATTGTTTTTCCTGTCAAGGTCTTGACAAAGATCTGCAT 6898116 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || ||||| || | ||| |||||| || | |||||||| | Sbjct 24281654 GCCACCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 24281595 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | |||||| | || || | ||| || |||||||| ||||| | ||| || || | || Sbjct 24281594 AAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 24281535 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| ||||| || |||| ||||||| || ||| || ||| ||| ||| | Sbjct 24281534 GATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGG-AGCTCTCCA 24281476 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| ||||| || | || ||||||||||||||||| Sbjct 24281475 CCTCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 24281427 >seq3 Length=44396707 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || ||||| || | ||| |||||| || | |||||||| | Sbjct 21554256 GCCACCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 21554315 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | |||||| | || || | ||| || |||||||| ||||| | ||| || || | || Sbjct 21554316 AAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 21554375 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| ||||| || |||| ||||||| || ||| || ||| ||| ||| | Sbjct 21554376 GATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGG-AGCTCTCCA 21554434 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| ||||| || | || ||||||||||||||||| Sbjct 21554435 CCTCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 21554483 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || ||||| |||| ||| |||||| || | ||||| || | Sbjct 19911929 GCCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 19911988 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || | || ||||||||||| ||||| | ||| || || | || Sbjct 19911989 AAGAGTTCTTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 19912048 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| ||||| || |||| ||||||| || ||| |||||| ||| ||| | Sbjct 19912049 AATACCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTGTCG-GAGCTCTCCA 19912107 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| ||||| || | || || ||||| || ||||| Sbjct 19912108 CCTCCAAAGTAATAGTCTTTCCCGTCAACGTCTTGACAAAGATCTGCAT 19912156 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||||||| | ||| |||||| || | |||||||| | Sbjct 19911701 GCCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTGC 19911760 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | |||||||| || || || | || || || || | || Sbjct 19911761 CAAGGTGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGTGG 19911820 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || ||| | || || || ||| |||||| ||| ||| | Sbjct 19911821 GATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCG-GAGCTCTCCA 19911879 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || || || || ||||| || || || ||||| || ||||| Sbjct 19911880 CCTCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCAT 19911928 >seq6 Length=32494073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||| || | |||| ||||||||| | ||||| || | Sbjct 11637464 GCCTCCACGCAGACGCAACACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC 11637405 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| || | || ||||| || || || | || || ||||| | || Sbjct 11637404 TAAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGG 11637345 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| ||||||| | ||| |||||| ||| ||| | Sbjct 11637344 AATGCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCG-GAGCTCTCCA 11637286 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| |||||||| || || || || || || || || || ||||| Sbjct 11637285 CCTCTAGGGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 11637237 >seq2 Length=44367670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | || | |||| |||| || || ||||| || Sbjct 7316012 CTCCTTCTGGATGTTGTAGTCGGCAAGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAA 7315953 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||| |||||| ||||| | || | ||||| || || |||| ||||||| | Sbjct 7315952 GATCAGTCGCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 7315893 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | ||||| |||| ||||| || || || ||||| |||||||| Sbjct 7315892 GTCGATCGTGTCTGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 7315833 Query 43098 AAAAATTTGCATTTTCTTAATTTT 43121 ||| || ||||||||| | |||| Sbjct 7315832 AAAGATCTGCATTTTCGTTTTTTT 7315809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381357770987610