Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 4e-15 seq3 96.9 4e-15 seq4 91.5 1e-13 seq5 89.7 5e-13 seq2 87.8 2e-12 >seq6 Length=32494073 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 |||||| || | |||||| || || |||| || || || ||||| |||||||| || || Sbjct 11637464 GCCTCCACGCAGACGCAACACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC 11637405 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | |||| |||||| || || || ||||| |||| |||||||||||||| |||| Sbjct 11637404 TAAG-GTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAG 11637346 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||| || || || || ||| | | || | ||||| | | || | Sbjct 11637345 GAATGCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCCA 11637286 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || | || | ||||| || || | ||| || ||||| || |||||| Sbjct 11637285 CCTCTAGGGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCATA 11637236 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| ||||||||||| || || |||| ||||| || ||||| |||||||| || Sbjct 7251374 CCTCCACGTAAACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAGTCAGCG 7251433 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 7251434 AGAGTACGCCCATCTTCAAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGTGGG 7251493 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||| || ||| | | || | |||||| | | ||| || Sbjct 7251494 ATTCCCTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCACC 7251553 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| | || || ||||| || ||||| Sbjct 7251554 TCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 7251600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||||| || ||||| ||||||||||| Sbjct 7251146 CCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCG 7251205 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| ||||| || || ||| |||||| | ||||| |||||||| Sbjct 7251206 AGAGTACGCCCATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGA 7251265 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 7251266 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 7251325 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| ||||| ||||| | ||| || ||||| || |||||| || Sbjct 7251326 TCCAAAGTACTAGTCTTCCCGGTGAGTGTCTTAACGAAAATCTGCATACCT 7251376 >seq3 Length=44396707 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||||| ||||| || ||||||||||| | Sbjct 19893882 CCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAGCC 19893941 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||| || || || || || ||| |||| || | ||||| || ||||| Sbjct 19893942 AGTGTTCTGCCGTCCTCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAGGA 19894001 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || ||| || | | || | ||||| | || || Sbjct 19894002 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCTATAGTGTCTGAACTCTCCACC 19894061 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| ||||||| ||| || ||||| || |||||| Sbjct 19894062 TCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAAATCTGCATA 19894109 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| || || ||||||| || || || || || ||||||||||| Sbjct 19911701 GCCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTGC 19911760 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||| ||||| ||||| |||| ||||||||||| || || || Sbjct 19911761 CAAGGTGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGTGG 19911820 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||||| || | | || | ||||| | | || || Sbjct 19911821 GATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCAC 19911880 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||| | ||| || || || || ||||| Sbjct 19911881 CTCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCAT 19911928 >seq4 Length=32756842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| ||||| ||||| || |||||||||||| | || | ||| Sbjct 5791398 CAAGACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTC 5791457 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 |||||| || ||||| || ||||||| | |||||| || || ||||||||||||||||| Sbjct 5791458 TTCGAGCTGCTTACCGGCGAAGATCAGCCTTTGCTGGTCTGGTGGTATGCCTTCTTTGTC 5791517 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| |||||||| || |||||| ||| |||||||| ||||| |||||||| ||| Sbjct 27090940 TCTTCGAGCTGTTTACCGGCGAAGATCAAACGCTGCTGATCCGGAGGGATGCCTTCCTTG 27090999 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| | | || | ||||| | || || || || | || | Sbjct 27091000 TCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGTGTGATG 27091059 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| ||||| || ||||| Sbjct 27091060 GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 27091094 >seq5 Length=39062406 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||||| ||||| || |||||||| ||| || ||| || ||| ||||| || Sbjct 6898091 ATGAAGCGTAGACTCTTTCTGGATGTTGTAGTCGGCCAATGTTCTACCGTCCTCGAGCTG 6898032 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || || || |||| || | |||||||||||||| || ||||| ||||| ||| || Sbjct 6898031 CTTTCCGGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGAATCTT 6897972 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | ||||| | | ||| || || | || | ||||| || || Sbjct 6897971 GGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCCGT 6897912 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | || || ||||| |||||||| Sbjct 6897911 GAGAGTCTTAACGAAGATTTGCAT 6897888 >seq2 Length=44367670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || || |||| || || || || || |||||||| || Sbjct 25763544 GCCACCACGTAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGC 25763603 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || |||||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 25763604 CAAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 25763663 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || ||| | | || | ||||| | | || || Sbjct 25763664 GATGCCTTCCTTGTCTTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTCTCAAC 25763723 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || ||||| |||||||| Sbjct 25763724 CTCCAATGTGATAGTCTTGCCGGTGAGAGTCTTCACGAAGATTTGCAT 25763771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| |||| |||||| || || |||| ||||| || || || ||||||||||| Sbjct 25764001 CCTCCACGTAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCA 25764060 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || |||||||| || || || |||||| | ||||| || || || Sbjct 25764061 AGAGTACGTCCA-TCCTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGGGG 25764119 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| || || ||| | | || | ||||| | | || || Sbjct 25764120 AATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAAC 25764179 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||||||||| || || || |||||| Sbjct 25764180 CTCCAAAGTGATAGTCTTTCCCGTCAATGTTTTAACAAAAATCTGCATA 25764228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998270604400