Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 149 9e-31 seq6 107 3e-18 seq5 84.2 3e-11 >seq8 Length=44809562 Score = 149 bits (164), Expect = 9e-31 Identities = 391/583 (67%), Gaps = 18/583 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| ||||| |||||||||| | Sbjct 36833699 TGTTCCCAATCCAATACCCTCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 36833640 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| || ||||| || ||| ||||| ||| ||||||| || | | | Sbjct 36833639 GGACCGCCGAGGAAGTCGACCTCTCCCAGGACACACGCGACTGGGAGAATC---TCAACG 36833583 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || ||| | | |||||||| |||| |||||| ||||||| Sbjct 36833582 ACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 36833523 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| ||||| | || ||| | || || | ||| |||| | || || Sbjct 36833522 TCCTCGAGAATCTCGCCTCTCGGTTCATGTCCGACGTCCAGGTCTCC-GAGGCG-CGCGC 36833465 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| ||| |||||| | ||||| || |||||| ||| | Sbjct 36833464 CTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTT 36833405 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAA---ACACATGCTCTTTAACGCAATCGACAC 125350 |||| |||||| || | ||| | || ||| ||||| ||| ||||| || Sbjct 36833404 AGACACGTACATCAAGGA-CAACAAGGAGCGGGAC-CAT-CTCTTCCGCGCGATCGAGAC 36833348 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | || | | || ||||| ||||||| || ||||||||||| | || | Sbjct 36833347 CATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGATGGGTCCCAGAC 36833288 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | | ||||| || | ||||| ||||| ||| || || || ||||| || ||||| Sbjct 36833287 T---TTTGCCGAGAGGATCGTGGCCTTCGCGTGCGTCGAAGGGATATTCTTCTCCGGTAG 36833231 Query 125471 -TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || ||| | ||||| ||||| |||||||| || |||||||| || |||| | | Sbjct 36833230 CTTCTGC-TCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTGACCTTCTCCA 36833172 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| | || || ||||||| ||||| ||||| || || || Sbjct 36833171 ACGAGCTGATCTCGAGAGACGAAGGCCTGCACTGCGATTTCGC 36833129 >seq6 Length=32494073 Score = 107 bits (118), Expect = 3e-18 Identities = 382/586 (65%), Gaps = 21/586 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| || || | |||||||| | Sbjct 29609127 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 29609068 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| || ||||| || ||| | |||| ||| |||||| | | | | Sbjct 29609067 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAGCG 29609008 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || | ||| | | |||||||| |||| |||||| || |||| Sbjct 29609007 ACGGAGAGCGCCACTTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCG 29608948 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || || | || ||| | || || | ||| |||| || || Sbjct 29608947 TCCTCGAGAACCTCGCCTCTCGGTTCATGTCCGACGTGCAGGTCTCC-GAGGCC-CGCGC 29608890 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| ||| |||||| | ||||| || |||||| | ||| | Sbjct 29608889 CTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTT 29608830 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA-----CATGCTCTTTAACGCAATCGAC 125348 || | ||||| ||| || | | | ||| ||||| ||| ||||| Sbjct 29608829 AGATACTTACATCAAGGAT----AATAGAGAGAGGGATCAT-CTCTTCCGCGCGATCGAG 29608775 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG-ACGACAA 125407 ||| | || | | || ||||| ||||||| | ||||||||| | | || Sbjct 29608774 ACGATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCTTGACGTGGATCGACGGATCTCAG 29608715 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 | ||| | |||| || | ||||| || || ||| || || || ||||| || || Sbjct 29608714 GCCTTTG----CCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGG 29608659 Query 125468 TAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 ||| || ||| | ||||| ||||| |||||||| || |||||||| || || || | Sbjct 29608658 TAGCTTCTGCT-CGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCT 29608600 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || ||||||||||||| ||||| ||||| || Sbjct 29608599 CCAACGAGCTGATCTCGAGAGACGAGGGCCTGCACTGCGACTTCGC 29608554 >seq5 Length=39062406 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 125457 TTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 || |||| || || ||| |||||||| ||||| |||||| | || || ||||| || Sbjct 19793166 TTTTTTTGGGACAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGT 19793107 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || | |||||| ||||||| ||||||||||||| |||||||||||||| Sbjct 19793106 TTAACCTTCTCGAACGAGCTTATATCGAGAGACGAGGGCCTCCACTGTGACTTTGC 19793051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035625054200