Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq1659 82.4 2e-11 >seq1659 Length=1576 Score = 82.4 bits (90), Expect = 2e-11 Identities = 115/156 (74%), Gaps = 14/156 (9%) Strand=Plus/Plus Query 38249 TGCGCGATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAG 38308 |||||| || ||| | ||||||||||| || |||| ||||||||||||||| ||||||| Sbjct 1313 TGCGCGCTGCTGTTGACGCTGGCCGTCAGCGGCTGCGCGTCAACGCCACCTGCCCCGCAG 1372 Query 38309 TGTCGACAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAG--CCCGCC--CCAGA 38364 |||| | ||| || ||||||| || ||| | |||||| ||||| | | Sbjct 1373 TGTC----CGCCAAT--GCCGGCGCCGCCGGCCTGGCTGATGCAGGAACCGCCGAACTCA 1426 Query 38365 CTGGCAGACTCCGCTCAACGGGATTATTTCACCCTC 38400 || ||||| |||| || |||||||||| ||||| Sbjct 1427 CT-GCAGA---GGCTCGACAGGATTATTTCGCCCTC 1458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128351320865190