Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 seq8 89.7 4e-13 seq6 82.4 6e-11 seq2 82.4 6e-11 >seq3 Length=44396707 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || || ||||| || || || ||||| |||||||| || ||| | | | | || Sbjct 19894124 TAAGACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGCAAGAGTACGCCCATC 19894183 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||| || ||||| | ||||| | || ||||| ||||| || || || || Sbjct 19894184 TTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATACCCTCCTTATC 19894243 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||| || ||| | || |||||||| | | || || || || |||||||| Sbjct 19894244 CTGAATCTTGGCTTTAACATTGTCGATGGTATCTGAACTCTCCACCTCCAAAGTAATGGT 19894303 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || |||| ||| || ||||| || |||||| Sbjct 19894304 TTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 19894337 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || || || || |||||||||||| || |||| ||||||| Sbjct 19894355 AACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCCAGGGTTCTGCCGTCTTC 19894414 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | || | | ||| || || ||||| ||||| || || Sbjct 19894415 CAGCTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTATCCTG 19894474 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| || || | || ||||| ||| ||||| || || | ||| ||||| || Sbjct 19894475 AATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGTTTTCCACCTCGAGGGTGATGGTCTT 19894534 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| || || || || ||||| Sbjct 19894535 TCCTGTGAGAGTCTTAACGAAGATCTGCAT 19894564 >seq8 Length=44809562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || ||||| ||||||||||| ||| | | | ||||| | || Sbjct 30326406 ATGGAGCGTGGACTCCTTTTGAATGTTGTAATCCGCAAGAGTGCGTCCATCTTCGAGCTG 30326347 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || ||||| | || | | ||| ||||| ||| || ||||| ||||| ||| || Sbjct 30326346 CTTTCCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTT 30326287 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || ||||| || | || || || || || ||||||||||| | Sbjct 30326286 TGC-CTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTTTTACCGG 30326228 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || |||||||| |||||| Sbjct 30326227 TGAGGGTCTTGACAAAAATCTGCATA 30326202 >seq6 Length=32494073 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || ||||| ||||||||||| ||| | | | | ||| Sbjct 7251161 AAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCGAGAGTACGCCCATCT 7251220 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||| | || |||||| ||||| ||||| ||||| Sbjct 7251221 TCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 7251280 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| || | || ||||| ||| | || || || || ||| | || Sbjct 7251281 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTACTAGTC 7251340 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || ||||| |||||| Sbjct 7251341 TTCCCGGTGAGTGTCTTAACGAAAATCTGCATA 7251373 >seq2 Length=44367670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || ||||||||||| ||| | | | || Sbjct 25764016 AAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCC 25764075 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| ||||| ||| | ||||| | || ||||| ||||| || |||||||| Sbjct 25764076 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCT 25764135 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| || ||| | || ||||| ||| | || || || || || || || Sbjct 25764136 TGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATAGTC 25764195 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| |||||||| |||||| Sbjct 25764196 TTTCCCGTCAATGTTTTAACAAAAATCTGCATA 25764228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362167966219845