Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq1239 120 6e-23 >seq1239 Length=2566 Score = 120 bits (132), Expect = 6e-23 Identities = 288/432 (67%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 2100 TCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTC 2159 || || | |||| |||| || || | ||||| | || | || |||||||| |||||| Sbjct 2000 TCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTC 2059 Query 2160 GAGCGC-AGGTGGCTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATT 2218 |||| | | || || |||||||| | |||||| | |||| ||| ||||| Sbjct 2060 AGGCGCCACTTTGCA-TGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATT 2118 Query 2219 CGGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGA 2278 ||||||||||| | ||||||| ||| | || ||||| | |||||| || |||||| Sbjct 2119 GGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCT 2178 Query 2279 GTTGGTGCCGAGAAAAATCAGTTTTGC---------GCCGTTATTGCCCAGGACAATCGG 2329 ||| || |||||| ||||| || ||||| |||| || || || || Sbjct 2179 GTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGG 2238 Query 2330 GTCACCGGTCAGGTCAACGTC-AACCA--GACGGGCAAAGGCGATGATGTATTCGCGGAA 2386 | |||| ||| || | || ||||| | ||| || |||| |||||| |||||| Sbjct 2239 ATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCTGCGGAA 2298 Query 2387 CACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGC 2446 ||| | | ||| | || || ||||| ||||||||||| | ||||| || || Sbjct 2299 CACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGC 2358 Query 2447 ACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGAT 2506 || | ||| ||| || || || | ||| || |||||||| || |||||||| Sbjct 2359 GTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGAT 2418 Query 2507 ATCTCGGATGCG 2518 || ||||| || Sbjct 2419 ATGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98205031970100