Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq8 84.2 2e-11 seq2 82.4 6e-11 >seq3 Length=44396707 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || ||||||||||| || | ||| || ||||||||||||| || || Sbjct 19912416 GTCGACTCCTTCTGGATATTGTAATCAGCGAGGGTTCTGCCGTCCTCCAGCTGCTTTCCG 19912475 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||||||| ||| | |||||| ||||| || || ||| Sbjct 19912476 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTA 19912535 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| ||| |||| ||| ||||| || || || | ||| Sbjct 19912536 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTC 19912595 Query 19025 TTGACAAAAATTTGCAT 19041 || || || || ||||| Sbjct 19912596 TTAACGAAGATCTGCAT 19912612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||| || ||||| |||||||| |||| |||| || ||||| Sbjct 19893897 AAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAGCCAGTGTTCTGCCGTCC 19893956 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||||| || || ||| | || ||||||||||| || || | ||| || ||||| Sbjct 19893957 TCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 19894015 >seq8 Length=44809562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || |||||||| |||| || | | ||||| Sbjct 30326867 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCA 30326808 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| || | || |||||||| || ||| || | || || ||||| | Sbjct 30326807 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 30326748 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | ||| || || ||| ||| | ||| || || || Sbjct 30326747 ATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTG 30326688 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| |||||||| |||||||| Sbjct 30326687 CCTGTCAAAGTCTTGACAAAGATTTGCAT 30326659 >seq2 Length=44367670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| || |||||||| || ||| Sbjct 25764457 CCACCACGGAGCCTGAGAACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAGTCAGCC 25764516 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | || |||| || || || || | ||||| |||||||||||| || Sbjct 25764517 AAGGTCCTGCCATCTTCCAATTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 25764576 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||| || || || || || ||| || | | ||| || | ||| || ||| Sbjct 25764577 ATGCCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATCGT---GTCAGAGCTTTCC 25764633 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 |||| ||| ||||| || || || | |||||| || || || ||||| | |||| Sbjct 25764634 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAAT 25764690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414559941117730