Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq1239 134 3e-27 >seq1239 Length=2566 Score = 134 bits (148), Expect = 3e-27 Identities = 289/431 (67%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 2099 TCACCGGACCAGAACGGATAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTC 2158 || |||| |||| ||||||| || | ||||| | || | || |||||||| |||||| Sbjct 2000 TCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTC 2059 Query 2159 GAGCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTC 2218 |||| | || |||||||| | |||||| | |||| ||| ||||| Sbjct 2060 AGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTG 2119 Query 2219 GGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAG 2278 ||||||||||| | ||||||| ||| | || ||||| | |||||| || |||||| | Sbjct 2120 GGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTG 2179 Query 2279 TTGGTGCCGAGAAAAATCAGTTTTGC---------GCCGTTATTGCCCAGGACAATCGGG 2329 || || |||||| ||||| || ||||| |||| || || || || Sbjct 2180 TTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGA 2239 Query 2330 TCACCGGTCAGGTCAACGTC-AACCA--GCCGGGCAAAGGCGATGATGTATTCACGGAAC 2386 | |||| ||| || | || ||||| || ||| || |||| |||||| |||||| Sbjct 2240 TTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCTGCGGAAC 2299 Query 2387 ACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 2446 || | | ||| | || || ||||| ||||||||||| | ||||| || ||| Sbjct 2300 ACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCG 2359 Query 2447 CGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATA 2506 || | ||| ||| || || || | ||| || |||||||| || ||||||||| Sbjct 2360 TCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATA 2419 Query 2507 TCGCGGATGCG 2517 | |||||| || Sbjct 2420 TGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104464042805340