Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 4e-12 seq3 86.0 4e-12 >seq5 Length=39062406 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||||| ||||||||| | || | ||| |||| Sbjct 24281583 CATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTT 24281524 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || |||||| | ||| ||||| | |||||| || | || | Sbjct 24281523 TGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGA 24281464 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || || || ||||||||||| |||||||| Sbjct 24281463 TAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 24281427 >seq3 Length=44396707 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||||| ||||||||| | || | ||| |||| Sbjct 21554327 CATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTT 21554386 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || |||||| | ||| ||||| | |||||| || | || | Sbjct 21554387 TGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGA 21554446 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || || || ||||||||||| |||||||| Sbjct 21554447 TAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 21554483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354766595796660