Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1239 131 3e-26 >seq1239 Length=2566 Score = 131 bits (144), Expect = 3e-26 Identities = 570/879 (65%), Gaps = 51/879 (6%) Strand=Plus/Plus Query 2404 CTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGC 2463 |||||| || || |||||||| |||| ||| ||||| || | || || || || | Sbjct 1576 CTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCA--CGTC 1633 Query 2464 ACTGTCGCCG-GTGTGGGAC--GGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGG 2520 | |||| || | || ||| ||||| || || | |||||||||||| | |||| || Sbjct 1634 GC-GTCGTCGCGGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGG 1692 Query 2521 ATGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTG 2580 | | | |||| || |||| |||| ||| || || | |||||||| Sbjct 1693 CCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAATA-GCAGCGCTC 1749 Query 2581 CAGCTCCTCGAACGGGAATACAGA-TGCCTTATCGTCGACAAACTCGCACATAAACAGGT 2639 ||| || || | |||| ||| || | | ||||| |||| |||||| ||||| | Sbjct 1750 CAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCT-GTCGATGAACTTGCACATGAACAGCT 1808 Query 2640 TTTTAAAGTCCTCATCACTGTTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAG 2698 || ||| ||| || || || | ||| || | || |||||||||||| ||||| Sbjct 1809 GTTCGAAGCGCTCTTCGTCGTACTCCAG-CTGCAGGCGCTCCAGGTCGAACAGGTTGCAG 1867 Query 2699 CCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGA 2758 || ||||| | |||||| | ||| |||| | || |||||||| ||||| | ||| | Sbjct 1868 CCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAA- 1926 Query 2759 AGCCCACCGGC---GAGC-GCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACT 2814 | | ||||| || | ||||| | ||| | | | || ||| | | | Sbjct 1927 --CGCGCCGGCATGGATCTGCGCTTCG-CTG--GGCCA---CGGCCCGGCCTTCT----T 1974 Query 2815 GGCGCGCCCCTTGTTG---AACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAG 2871 ||||| ||||| ||| |||||| | |||| | ||||| || ||||| | Sbjct 1975 TCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTAC 2034 Query 2872 CGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTT---TGCGAGGCCATGCCCGA 2928 || | || || || ||||| || |||| |||| ||||||||||| | Sbjct 2035 CGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCA---CTTTGCATGCGAGGCCATCGCGCT 2091 Query 2929 GGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTC 2988 ||| || | |||||||||| ||||| ||||||||||| | ||| |||| || | || Sbjct 2092 GGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTG 2151 Query 2989 GCCGTTATGGCTCTGCGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGC------ 3042 ||||| | ||||||||| |||||| || || |||||| ||| | || Sbjct 2152 GCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGG 2211 Query 3043 ---GCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCAGGTCGACGTC-AACCAGT-CGC 3097 ||||| |||| | || || || | ||| | ||| |||| || ||||| | ||| Sbjct 2212 CTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGC 2271 Query 3098 -GCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAA 3156 || ||| || |||||| |||||||| | | ||| | || || ||||| || Sbjct 2272 GGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAA 2331 Query 3157 AATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGT 3216 ||||||||| | |||||| | ||| || | || ||| || |||||| | || Sbjct 2332 AATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGT 2391 Query 3217 CGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACG 3255 | || |||||||| || || || |||| ||| || || Sbjct 2392 CAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97910640867420