Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq6 95.1 1e-14 seq3 93.3 4e-14 seq2 89.7 4e-13 seq8 87.8 2e-12 >seq4 Length=32756842 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 48534 TCTCCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCG 48592 || ||||| || |||||||| |||||||| || | || || ||||| |||||| || Sbjct 27090901 TCACCTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCTTCGAGCTGTTTACCGGCG 27090960 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATA 48652 | || ||||||||||||||| || | | ||||||||| || || |||| | Sbjct 27090961 AAGATCAAACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACA 27091020 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | ||||| |||| |||||| ||||| ||| ||||| || ||||| || |||||| Sbjct 27091021 TTGTCGATGGTGTCGGAGGACTCCACCTCGAGTGTGATGGTCTTGCCGGTTAGGGTTTTC 27091080 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 27091081 ACGAAGATCTGCATC 27091095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||||||| || | Sbjct 29446832 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTACCGGCGAA 29446891 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| || || | | ||||||||| || || ||||| | Sbjct 29446892 GATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 29446951 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| || || ||||| ||||| || ||||| ||||| |||||| Sbjct 29446952 GTCG--ATGGTGTCGGAGGATTCGACCTCGAGGGTTATTGTCTTACCCGTGAGGGTTTTC 29447009 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 29447010 ACGAAGATCTGCATC 29447024 >seq6 Length=32494073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | ||||| || ||||| ||| |||||||||||||||||| ||||| Sbjct 11637463 CCTCCACGCAGACGCAACACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT 11637404 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||| || |||||||| || || | || | ||| ||||||||| || Sbjct 11637403 AAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 11637344 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACTC 48675 | | |||||| ||| || || ||| | |||| | ||||| |||| ||| Sbjct 11637343 ATGCCTTCCTTATCCTGGATCTT-AGCT---TTGACGTTATCAATGGTGTCGGAGCTCTC 11637288 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| | ||||| || || || ||||| || || || || |||||||| Sbjct 11637287 CACCTCTAGGGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 11637237 >seq3 Length=44396707 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||| || |||||| || || ||||||||||| Sbjct 19912385 ACCACCACGGAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 19912444 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||||||||||||||| ||| || | || | | |||||||||| || Sbjct 19912445 GAGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGG 19912504 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || |||| | | | | ||||| |||| ||| Sbjct 19912505 AATGCCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCGGAGCTTTCCA 19912563 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||| || || || ||||||||| Sbjct 19912564 CCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 19912613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || || ||||| || ||| || ||||||||||||||||||| | || ||||| Sbjct 19893897 AAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAGCCAGTGTTCTGCCGTCC 19893956 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | | || | | |||||| || || | | ||||||||| Sbjct 19893957 TCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCT 19894016 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | |||| || || | | |||| ||| | || ||||| Sbjct 19894017 TGGATCTTTGCCTTGACATTGTCTATAGTGTCTGAACTCTCCACCTCCAGAGTGATGGTC 19894076 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || ||||||||||| Sbjct 19894077 TTCCCGGTCAGTGTCTTAACGAAAATCTGCAT 19894108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | |||||| |||||||| || |||||| |||||||||||||| ||| Sbjct 19911702 CCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTGCC 19911761 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||| || || || | || | ||| ||||| ||| || Sbjct 19911762 AAGGTGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGG 19911821 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| || ||||| ||| | | || || |||| |||| | Sbjct 19911822 ATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACC 19911881 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| || || || ||||| |||||||| Sbjct 19911882 TCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCAT 19911928 >seq2 Length=44367670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || |||||| ||||||||||| |||||||| || | ||| Sbjct 25763788 AACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTGCGACCATCC 25763847 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || || | || | ||||||||| || || | || || |||||| Sbjct 25763848 TCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCC 25763907 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| ||||| ||||||| |||| |||| || | || ||||| Sbjct 25763908 TGAATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCACTTCTAGAGTGATGGTC 25763967 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | || || ||||| |||||||| Sbjct 25763968 TTTCCTGTCAACGTCTTGACAAATATCTGCAT 25763999 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || ||| | |||| |||||||| Sbjct 7316023 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC-AAGCGTCCTCCCGTCTTCCAGCTG 7315965 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| || | | |||||||||| || || Sbjct 7315964 CTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTT 7315905 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | || || || | || || ||| | ||||| || || || || Sbjct 7315904 GGCTTTGACATTGTCGATCGTGTCTGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGT 7315845 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| |||||||| Sbjct 7315844 TAGGGTTTTCACAAAGATCTGCAT 7315821 >seq8 Length=44809562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | || | ||| || || ||||||||| |||||||| ||||| Sbjct 30325746 ACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCAGC 30325687 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||| |||||||||||| | | || | | |||||| ||| | Sbjct 30325686 -AAGAGTCCTTCCATCCTCGAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTG 30325628 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || || ||| || || ||||| | ||||| |||| ||| Sbjct 30325627 GGATTCCCTCTTTATCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGA 30325568 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||||||||| ||||| |||||| Sbjct 30325567 CCTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCATC 30325518 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||||||||| |||||||| ||||| | ||| | ||||| Sbjct 30326184 CACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGCGTGCGCCCATCCTC 30326125 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | | || | | |||||||||| || | | || || ||| Sbjct 30326124 CAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTATCCTG 30326065 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | ||||||| || | ||| ||| | || |||||||| Sbjct 30326064 GATCTTAGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCCAAGGTGATGGTTTT 30326005 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || ||||| || ||||| Sbjct 30326004 ACCGGTGAGGGTCTTGACAAAGATTTGCAT 30325975 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | ||| || ||| ||||||||||||||||||||| || | | || || | || | Sbjct 30326412 CACAAGATGGAGCGTGGACTCCTTTTGAATGTTGTAATCCGCAAGAGTG-CGTCCATCTT 30326354 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || | | ||||| || || | | |||||||||| Sbjct 30326353 CGAGCTGCTTTCCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCT 30326294 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||||| | | ||||| || | ||| ||| | || ||||||| Sbjct 30326293 GAATCTTTGCCTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGATGGTTT 30326234 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||| || || |||||||||||||| Sbjct 30326233 TACCGGTGAGGGTCTTGACAAAAATCTGCAT 30326203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238133972545