Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1734 96.9 2e-15 >seq1734 Length=1503 Score = 96.9 bits (106), Expect = 2e-15 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 72258 ATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGAT-AACCGAACGCT 72316 || ||| | || |||||||| || |||||| ||| | ||| | || ||||| || | Sbjct 956 ATCATGGTTGATTACCTGCAGCTGATGCGCTGCCCAG-GCTACGAGGGGAACCGCACTCA 898 Query 72317 GGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG-G 72375 ||| | || ||||| || || || |||||| |||||| || || || ||| | || | Sbjct 897 GGAGGTCGCGGAGATCTCCCGGGCATTGAAGGGGTTGGCCAAAGAGTT-CAATTGCCCCG 839 Query 72376 TGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAA 72435 | | || | || || | || | ||| ||||| | |||| || || || | Sbjct 838 TCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGA 779 Query 72436 ATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGT 72495 | |||| || || || || || || || ||||||||||| ||| | || ||||| | | Sbjct 778 ACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCT 719 Query 72496 ATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCG 72555 |||| ||||| || || ||||||| | || ||||| |||||||| | || ||| Sbjct 718 ATCGAGACGAGGTCTACAACCCGGACACTGAGTACAAGGGGGTTGCCGAGTTGATCCTCG 659 Query 72556 GAAAGCAACGAAATGG 72571 | ||||| || || || Sbjct 658 GCAAGCACCGGAACGG 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303225794496945