Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq1854 125 3e-24 >seq1854 Length=1396 Score = 125 bits (138), Expect = 3e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64932 ATGAGCGAGAACACCATCAACCAGGCGATCAAGCGCCTTGGGTTCGATGGGCTGCTGACT 64991 || |||||||||||| | || |||| | |||||| | || | | | |||||||| Sbjct 746 ATCAGCGAGAACACCCTGAATGGGGCGCTAAAGCGCATGGGCTACAAAAACCTGCTGACC 805 Query 64992 GGTCATGGGTTGCGAGGGACTTTCTCCACTGCGCTGCATGAAATGGGCTACGACACGACG 65051 || ||||| | || | ||| | ||||| || || | || |||||||| | | | Sbjct 806 GGGCATGGTATCCGGGCGACGATTTCCACCGCCCTCAACGAGCTGGGCTACCCGAAGGAG 865 Query 65052 TTGATCGAGGGCCAGCTTTCCCATGCCGATCCCAACAAGACGCGGGCGGCATACAACCAT 65111 | |||||||| || || || ||||||||||||||||||| || ||||| ||||||||| Sbjct 866 TGGATCGAGGTGCAACTGTCGCATGCCGATCCCAACAAGATCCGCGCGGCCTACAACCAT 925 Query 65112 GCCGCGCACGTTGAGCGTCGAAGGGCGATGATGCAAGACTGGGCTGA 65158 || | |||| |||| || || ||||||||| || |||||||| Sbjct 926 GCGGATTACGTAGAGCAGCGTCGGATGATGATGCAGGAGTGGGCTGA 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208492732941220