Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq3 322 6e-83 seq4 185 1e-41 >seq3 Length=44396707 Score = 322 bits (356), Expect = 6e-83 Identities = 456/635 (72%), Gaps = 11/635 (2%) Strand=Plus/Plus Query 138250 CAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGG 138309 ||||| ||||||||||||| || ||||| || || || || || || ||||| | | Sbjct 24109911 CAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAG 24109970 Query 138310 GTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTC---C 138366 ||||||| ||||||||||| || |||||||| || || || || |||||| | Sbjct 24109971 GTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCC 24110030 Query 138367 TGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAG 138426 | || |||| |||||||| |||| ||| | || || | |||||| || |||| | | Sbjct 24110031 TCTTTTTCCA--AGGGTTTC-ATAATTGGGCACTGAATTCATTTCATTTGCTGGGAATTG 24110087 Query 138427 CAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAA-ATACT 138485 | ||| | || || | |||||| | || |||||| |||||||||| ||||||| || | Sbjct 24110088 CCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATTTT 24110147 Query 138486 TTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAA 138545 || | |||| |||| || |||||| || || ||| | || | ||||| ||| Sbjct 24110148 TTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAA 24110207 Query 138546 GAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTT 138605 ||||| ||||||||||| || |||||||| | ||||| | ||||||||| ||||||| Sbjct 24110208 GAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTT 24110267 Query 138606 AGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACT 138665 ||||| | |||| | || ||||||||| | ||||| || || | ||| | ||| Sbjct 24110268 TCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATG 24110327 Query 138666 AGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAA 138725 ||| | ||| || | ||||| ||| | |||||| | || |||| ||| | || ||| Sbjct 24110328 AGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAA 24110387 Query 138726 GAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTG 138785 |||||| ||||||| |||||||| || || || || |||||||| || || |||||| | Sbjct 24110388 GAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTTTTA 24110446 Query 138786 AATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGAT---CAACCTCACGAAAACTTTGTT 138842 || |||||| | || | |||||||| || |||| || ||||| |||||| || | Sbjct 24110447 AACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATA 24110506 Query 138843 TTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || |||| || || || ||| | || | | |||| Sbjct 24110507 TTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 24110541 >seq4 Length=32756842 Score = 185 bits (204), Expect = 1e-41 Identities = 216/292 (74%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 ||| |||| ||| || |||||||| || | | |||||||| || | ||||||| ||| Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACA 135819 || || ||||| ||||||| || || |||||||||| || ||||||| |||| || Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 135820 AGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGT 135879 ||| ||| | |||||||||| || || || ||||| ||||| |||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 135880 TTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGT 135939 || || || || ||||||||||| ||||| || || |||||||| || || ||||| || Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 135940 CTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGT 135991 ||||| || | || || |||||||||| | || | || | |||||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCTAGT 25314943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627948022768000