Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq4 163 8e-36 >seq4 Length=32756842 Score = 163 bits (180), Expect = 8e-36 Identities = 147/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 19705 TTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTT 19763 ||||||| ||||| | | |||||| |||| ||||| |||||| | ||||||||||||| Sbjct 25315145 TTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTA 25315087 Query 19764 GGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATG 19823 || |||||||||||||| ||||||||| | ||||| ||||| || ||||| || |||||| Sbjct 25315086 GGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCACAACATTCTTATG 25315027 Query 19824 CATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATG 19883 || || || |||||| | ||||| ||||| |||||||| || | || || ||||||| Sbjct 25315026 CACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTTCCTATTTAGTGCTATG 25314967 Query 19884 CA 19885 || Sbjct 25314966 CA 25314965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437234704020