Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq4 147 4e-30 >seq4 Length=32756842 Score = 147 bits (162), Expect = 4e-30 Identities = 194/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 ||||||||| | | || | ||||| |||| |||||| |||||| |||||||| || Sbjct 25315218 TGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTTGCATATTCAGCTTCT 25315159 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 || || | | | ||||| ||| | | |||||| | ||||| || || || | Sbjct 25315158 GTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAAT 25315099 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||| |||| || || || || |||||||| ||| | ||||| ||||| || || Sbjct 25315098 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCAC 25315039 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || || Sbjct 25315038 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTTCCTA 25314979 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTA 212179 || ||||||||| |||| |||| || Sbjct 25314978 TTTAGTGCTATGCATAGTTC-CTTGGTA 25314952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807529509650200