Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 >seq3 Length=44396707 Score = 147 bits (162), Expect = 2e-30 Identities = 404/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Plus Query 172219 TCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCG 172278 |||||||||| |||||| ||||||| | ||||||||| | ||| |||||||| | Sbjct 24109950 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 24110009 Query 172279 CAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCAT 172338 | || || ||||| | || | || | || || || || ||| | || ||| ||| Sbjct 24110010 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 24110069 Query 172339 TTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTG 172398 ||||| || |||| | || ||| |||| || | || | |||| || || |||||| Sbjct 24110070 TTCATTTGCTGGGAATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTG 24110129 Query 172399 CAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAAT 172458 | || ||| ||| | ||| | | ||| || | ||| ||| | | ||| Sbjct 24110130 CTACTGTA--GAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAAT 24110178 Query 172459 CTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTG 172518 | | || || | || | || | |||||||||||| ||| | || | Sbjct 24110179 ---------TATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 24110229 Query 172519 CTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACT 172578 ||||| | || ||||||| || ||||| || ||||| || ||| | ||||| | Sbjct 24110230 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 24110289 Query 172579 TCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTC 172638 || ||||||| || ||||| || | ||| | ||| || | | || ||||||| Sbjct 24110290 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 24110349 Query 172639 TTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACC 172698 | || | ||||| | || || | ||| | || ||||| || | ||||| ||||| | Sbjct 24110350 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 24110409 Query 172699 CAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGA 172758 | || ||||||| ||||||||||| || |||||| | || |||||||| | | |||| Sbjct 24110410 CGGA-CTTGAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 24110468 Query 172759 TGTCATCTGTCGAT---CAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCAC 172815 || | || ||| || || ||||| ||| || | ||| | || || || || |||| Sbjct 24110469 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 24110528 Query 172816 GAGGCAACGCACTATAA 172832 | || | | | || ||| Sbjct 24110529 GTGGAAGCACTCTTTAA 24110545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570250658323800