Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq8 136 5e-27 seq7 109 7e-19 seq2470 96.9 4e-15 seq3 96.9 4e-15 >seq6 Length=32494073 Score = 143 bits (158), Expect = 3e-29 Identities = 243/348 (70%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || ||||| ||||||||||| ||||||||||| || || |||||||| || Sbjct 29608545 ATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 29608604 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 ||||| || ||||| || |||||||| || ||||| || || || ||| || || Sbjct 29608605 GTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAG 29608664 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477 ||||| || ||||| || |||||| || | | ||||| || | ||| ||| | Sbjct 29608665 AAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGAGA 29608720 Query 33478 T--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | || |||||| | ||||| | ||||||||| || || || ||||| || || Sbjct 29608721 TCCGTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGAT 29608780 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 || ||||||| | | || || |||| || | |||||||| | || ||||| Sbjct 29608781 CGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGACT 29608840 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 ||||| || || || ||||| || || || ||||| || |||||||| Sbjct 29608841 GTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAA 29608888 >seq8 Length=44809562 Score = 136 bits (150), Expect = 5e-27 Identities = 404/613 (66%), Gaps = 10/613 (2%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || ||||||||||||||||| || |||||||| || || |||||||| || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || | || ||||| || || ||||| || ||||| || || || ||| || || Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAG 36833239 Query 33418 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCGCTG 33474 ||||| || ||||| || ||| || ||||| | | ||||| || || | || | Sbjct 36833240 AAGAATATCCCTTCGAC-GCACGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGAC-- 36833296 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 ||| |||||| | ||||| | ||||||||| || || || || || || || Sbjct 36833297 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 36833356 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || ||||||| || || || | || || | || || || | || || || Sbjct 36833357 GCGCGGAAGAGATGGTCCCGCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 36833416 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 ||||| || || || ||||| || || || ||||| || |||||||| | |||||| Sbjct 36833417 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 36833476 Query 33655 GTAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 | | ||| || || | ||| || || || | ||| || || |||||||| Sbjct 36833477 GAGACCTGGACGTC-GGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGA 36833535 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 33772 ||| || || || || | || ||||| || || | || || | ||| || || | Sbjct 36833536 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 36833594 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 36833595 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 36833654 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTG 33892 |||| || ||||| | |||||| | | |||||||||||||| || ||||| | || Sbjct 36833655 CCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAATCTGTCTG 36833714 Query 33893 GATTTGGTGCAAG 33905 | |||| | ||| Sbjct 36833715 GGGTTGGGGTAAG 36833727 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 25053513 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 25053572 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 25053573 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 25053632 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 25053633 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 25053692 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 25053693 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 25053740 >seq7 Length=41685129 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||| || | ||||||||||| || ||||||||| | ||| | || || Sbjct 5826531 AGTTCCTGAATTGAAGAGAGTAGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 5826472 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | |||||| || || || || || ||||| || || | ||| | ||| | Sbjct 5826471 GTAAGTTTGAATAGCGGAATCAATGTCTTGTTTGTGAATCCCAACAGAGACCCTCATGAG 5826412 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | | ||| | ||| || | ||| ||| | || | Sbjct 5826411 CATGTGCTGAGGCCTTTCAACAACTATCCCGTTGACTTTTAAGAGGTATGATCTCTCAAG 5826352 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 5826351 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 5826304 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 36269583 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 36269524 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||| ||| | ||||| || || || || ||||| | ||||| || || || ||| Sbjct 36269523 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 36269464 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 36269463 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATAT 36269404 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||||||||| ||||| Sbjct 36269403 TCCCTCAATGCTATCATCCTTCATG 36269379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| |||| |||| | || | || |||||||| |||||| Sbjct 5826853 TCCTCCTTGGTCAACATAACGAGCAGTGTCATTAAATACACGCAGCATTGGAACAATACC 5826794 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || ||||||||| || || || |||||| ||||| || || |||||| Sbjct 5826793 ATTAGAAGCACCATTGGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 5826734 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || |||| || | ||| || ||| || || ||||| || Sbjct 5826733 AACACCGATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 5826674 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 5826673 CCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5826632 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | || || | || ||||| || || ||||||||| | ||| | | || Sbjct 36269254 AGTTCCTGAGTTGAAGAGAGTGGGAGACGCATGAGTAAACCATCGCTGAGACATCAAATG 36269195 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || || ||| || ||||| || || | || | ||| | Sbjct 36269194 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCAACAGAAACCCTCATGAG 36269135 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | || | | |||||| | ||| ||| | || | Sbjct 36269134 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCGAG 36269075 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| || ||| || || || ||||| || Sbjct 36269074 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 36269027 >seq2470 Length=950868 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 185421 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 185362 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 185361 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 185302 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 185301 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 185242 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 185241 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 185194 >seq3 Length=44396707 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||||| | || |||||||| || ||||||||| | ||| | | | Sbjct 7812074 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 7812133 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 7812134 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 7812193 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 7812194 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 7812253 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 7812254 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 7812301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927382492200