Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq7 96.9 3e-15 seq3 91.5 1e-13 seq4 82.4 7e-11 >seq5 Length=39062406 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | |||||| |||| | ||| Sbjct 6897888 ATGCAAATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 6897947 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 6897948 GACACCATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 6898007 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||| || || ||||| || | ||||| | |||||| ||| Sbjct 6898008 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGAACATTGGCCGACTACAAC 6898067 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || ||||| ||||| | ||||| ||||| || || Sbjct 6898068 ATCCAGAAAGAGTCTACGCTTCATCTCGTCCTCAGGCT 6898105 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | ||||| Sbjct 25970506 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTTGAATCC 25970447 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| ||||| || ||||| || Sbjct 25970446 TCCGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 25970387 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || ||||||| | || ||| || || ||||| || | | | | | |||||| Sbjct 25970386 CAGCAGCGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTAGCCGACTAC 25970327 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 25970326 AACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 25970292 >seq7 Length=41685129 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 || |||| ||||| | || || ||||| |||| || || | |||||| |||| | | Sbjct 18540633 AATCAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTGG 18540574 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 |||| |||||||||||| | ||||| ||||| ||||| ||||| || || | Sbjct 18540573 AATCCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCC 18540514 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 | || || || | ||||| | || ||| || || ||||| || | | | | | || Sbjct 18540513 CGGACCAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGCGCACCTTAGCCG 18540454 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| ||||| || || || || ||| |||| || ||||| | || |||||||| Sbjct 18540453 ACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTGAGAGGAGG 18540399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||| | || || ||| |||||||| | || | || | Sbjct 33846523 ATGCAGATCTTCGTTAAGACACTCACCGGCAAAACGATCACCCTTGAGGTGGAGAGCTCC 33846464 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 33846463 GACACCATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 33846404 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | || ||| || || ||||| || | || ||| ||| ||||| || Sbjct 33846403 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAG-AACTCTAGCTGACTACAA 33846345 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||| || || || || || | ||||| ||||| || || Sbjct 33846344 CATCCAGAAGGAGTCGACCCTTCATCTCGTCCTCAGGCT 33846306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || ||||| |||||||| | || | || | Sbjct 33846295 ATGCAGATCTTTGTCAAGACGTTGACCGGAAAGACGATCACCCTAGAGGTGGAGAGCTCC 33846236 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 33846235 GACACCATCGATAACGTCAAGGCTAAGATACAAGACAAGGAGGGAATCCCACCTGATCAG 33846176 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || | || | || ||| || || ||||| |||| ||| ||| ||| ||||| || Sbjct 33846175 CAGAGGTTGATCTTCGCCGGGAAGCAGCTCGAGGATGGTAG-AACTCTAGCTGACTACAA 33846117 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || || ||| | |||||||| || | || | ||||| Sbjct 33846116 CATCCAGAAGGAGTCGACTCTGCATCTGGTGTTGCGTCTGCGTGGAGG 33846069 >seq3 Length=44396707 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| |||| | ||| | Sbjct 19894564 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 19894505 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| |||||| || || ||||| || || || ||||| Sbjct 19894504 GACACCATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCAG 19894445 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | || ||| || || || ||||| | |||| | | ||| || ||| Sbjct 19894444 CAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGAACCCTGGCCGATTACAAC 19894385 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || ||||||||| |||| |||| || || || Sbjct 19894384 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCAGGCT 19894347 >seq4 Length=32756842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || || || ||||| || || | || ||| || || |||||| Sbjct 5791517 GACAAAGAAGGCATACCACCAGACCAGCAAAGGCTGATCTTCGCCGGTAAGCAGCTCGAA 5791458 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || | ||| | | ||| || ||||| || ||||| |||||| | ||||| ||| || Sbjct 5791457 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTTG 5791398 Query 26982 AGACT 26986 || || Sbjct 5791397 AGGCT 5791393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478647172552400