Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 109 1e-18 seq8 105 2e-17 seq9 95.1 3e-14 seq7 89.7 1e-12 >seq2 Length=44367670 Score = 109 bits (120), Expect = 1e-18 Identities = 118/151 (78%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGAT-GCTTT 111729 ||||||||||| ||||| || | | | ||| |||||||| || ||| ||| ||||| Sbjct 42352711 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTG-CGAATGGAGAGCTTT 42352654 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 | || |||||||||||||| || |||||||| ||||||||||| || ||||| ||||| Sbjct 42352653 CGTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCTT 42352594 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||| | || ||||| ||| | ||||||| Sbjct 42352593 CTTACTCCCTTCTTACATGCATCCTCGCTCA 42352563 >seq8 Length=44809562 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| ||||| || | | | || ||||| ||||| || ||| ||| || Sbjct 4272875 ATGGCGCTTCCTCCATGCCA-CATGTTCGCACAGTTCTATGTGGCGGAAGGGGAGCTCTC 4272933 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| || |||||||| |||||||| ||||| Sbjct 4272934 ATGTCAAATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTC 4272993 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 |||| | || ||||| ||| | | |||||| | |||| || ||||| || || Sbjct 4272994 TTACTCTCTTCTTACCTGCATGCTAGCTCATGTGTGTGATCTTGTTCCTGGTGATTTTAT 4273053 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| || || || Sbjct 4273054 CCATGTCATTGGGGATGCTCACGTGTA 4273080 >seq9 Length=3036023 Score = 95.1 bits (104), Expect = 3e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| ||||||||||| | || |||||| Sbjct 54865 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTATGTTGCATATGGAGAGCTTTC 54923 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || || || ||||||||||| |||||||| ||||| Sbjct 54924 GTGTCAAATGTATCAGCGCTCAGCAGACATGGGTCTTGGTGTACCGTTTAACATTGCCTC 54983 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || | || ||||| ||| | |||||||| Sbjct 54984 ATATTCGCTTCTTACATGCATCCTCGCTCAT 55014 >seq7 Length=41685129 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/224 (71%), Gaps = 11/224 (5%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| ||||| || | ||| ||| | || | ||||| |||| Sbjct 36269380 ATGAAGGATGATAGCATTGAGGGAATATATGATACATTGAAAGAGTGTGCAGTTAT---- 36269435 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| ||| || || ||||| ||||| || | ||||| | ||||| |||| | |||| Sbjct 36269436 AAGTAAATCAGCTGGGGGAATAGGTGTTTCAGTTCACAACATCCGTGCGACAGGA-AGTT 36269494 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| |||||| ||| || || || | ||||| ||||| || || || | Sbjct 36269495 ACATTCGTGGCACAAATGGAACATCTAACGGTATTGTTCCAATGCTGCGGGTATTCAATG 36269554 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 | ||||| | ||||| ||||| || ||||| ||| | |||||| Sbjct 36269555 ACACTGCTCGCTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 36269597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311100490190