Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 seq5 102 7e-17 seq2 98.7 9e-16 seq3 95.1 1e-14 seq4 91.5 1e-13 seq6 84.2 2e-11 >seq7 Length=41685129 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || || ||| |||| ||| | || || ||| | | Sbjct 33846523 ATGCAGATCTTCGTTAAGACACTCACCGGCAAAACGATCACCCTTGAGGTGGAGAGCTCC 33846464 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 33846463 GACACCATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 33846404 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || ||| ||||| ||||| || | ||| ||| ||| || || || Sbjct 33846403 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAG-AACTCTAGCTGACTACAA 33846345 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || || || || || ||||| Sbjct 33846344 CATCCAGAAGGAGTCGACCCTTCAT 33846320 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| | || || || |||| ||| | || ||||| | Sbjct 26880400 AAAATGCAGATCTTCGTGAAAACCCTTACGGGGAAGACGATAACCCTAGAGGTCGAATCA 26880459 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 26880460 TCCGACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCAGAC 26880519 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| ||||| |||||||| | || | | ||| || Sbjct 26880520 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTCGAAGACGGGAGGACGCTGGCCGACTAC 26880579 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || |||| | ||| || | ||||||||||| Sbjct 26880580 AACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTACGCCTGAGAGGAGGA 26880630 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || ||||| |||| ||| | || || ||| | | Sbjct 33846295 ATGCAGATCTTTGTCAAGACGTTGACCGGAAAGACGATCACCCTAGAGGTGGAGAGCTCC 33846236 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 33846235 GACACCATCGATAACGTCAAGGCTAAGATACAAGACAAGGAGGGAATCCCACCTGATCAG 33846176 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | || ||| ||||| ||||| |||| || ||| ||| || || || Sbjct 33846175 CAGAGGTTGATCTTCGCCGGGAAGCAGCTCGAGGATGGTAG-AACTCTAGCTGACTACAA 33846117 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || || || | ||| | ||||| Sbjct 33846116 CATCCAGAAGGAGTCGACTCTGCATCTGGTGTT 33846084 >seq5 Length=39062406 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| |||| || || | Sbjct 6897888 ATGCAAATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 6897947 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 6897948 GACACCATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 6898007 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| ||||| || | |||| | ||| || ||| Sbjct 6898008 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGAACATTGGCCGACTACAAC 6898067 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || ||||| ||||| ||||| Sbjct 6898068 ATCCAGAAAGAGTCTACGCTTCAT 6898091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 23980 AGCCAAACAAAA--TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGA 24037 ||| || ||||| |||| | || || ||||| |||| || || | || ||| |||| Sbjct 25970516 AGCAAAGCAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGA 25970457 Query 24038 AGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCAT 24097 || || || |||||||||||| | |||||| ||||| ||||| |||||||| Sbjct 25970456 GGTTGAATCCTCCGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCAT 25970397 Query 24098 ACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| || || ||| |||| || | || ||| ||||| ||||| || Sbjct 25970396 CCCTCCGGACCAGCAGCGACTCATCTTCGCCGGAAAGCAGCTCGAGGA 25970349 >seq2 Length=44367670 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 23984 AAAC-AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 |||| |||||||| | ||||| ||||| |||| || || |||| ||| | || |||| Sbjct 7315813 AAACGAAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCG 7315872 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | | ||||| ||||| | |||||| ||||| ||||| |||||||| || | Sbjct 7315873 AATCATCAGACACGATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCAC 7315932 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 | ||||| ||| ||||||| | || ||| ||||| || ||||| | || | | || Sbjct 7315933 CGGATCAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACGCTTGCCG 7315992 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || ||||| || || || || || |||| | || | | ||||||||||| Sbjct 7315993 ACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTTCTCCGTCTGAGAGGAGGA 7316048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| || ||||| | || || | || || ||| | | Sbjct 25764227 ATGCAGATTTTTGTTAAAACATTGACGGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 25764168 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| |||||||| || || || || || || Sbjct 25764167 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 25764108 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 ||||| |||| | || |||||||||||||| ||| ||| | | | || ||||| | Sbjct 25764107 CAGAGGTTGATCTTCGCAGGCAAGCAACTCGAGGATGGACGTACTCTT--GCTGATTACA 25764050 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || || || ||||| |||| || || || Sbjct 25764049 ACATCCAGAAGGAGTCTACTCTTCACTTGGTCTT 25764016 >seq3 Length=44396707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| |||| || || | | Sbjct 19894564 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 19894505 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| || || |||||||| || || ||||| Sbjct 19894504 GACACCATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCAG 19894445 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || ||| ||||| || ||||| | ||||| | | |||||| ||| Sbjct 19894444 CAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGAACCCTGGCCGATTACAAC 19894385 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || |||||||| Sbjct 19894384 ATCCAGAAGGAATCTAC 19894368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| || || | || ||| |||| |||||| || | Sbjct 26086826 ATGCAGATCTTCGTGAAGACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCCTCC 26086767 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 26086766 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 26086707 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| ||||| || | | | | || ||| || ||| Sbjct 26086706 CAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAAC 26086647 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 26086646 ATCCAGAAGGAGTCGAC 26086630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||||||| | ||||| | || || ||| Sbjct 19894336 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 19894277 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || ||| |||||| || || || || || ||||| || || Sbjct 19894276 GATACCATCGACAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 19894217 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || |||||||| ||||||| | | | || || ||| Sbjct 19894216 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 19894157 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||| ||||||||| |||| || || ||| Sbjct 19894156 ATTCAAAAGGAATCTACACTTCACTTGGTCTTA 19894124 >seq4 Length=32756842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| || ||| || Sbjct 27091097 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACACTCGAGGTGGAGTCC 27091038 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | |||||| ||||| ||||| |||||||| ||||| ||| Sbjct 27091037 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGAT 27090978 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | |||| | || ||| || || |||||||||| | | | | | || || Sbjct 27090977 CAGCAGCGTTTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACCTTGGCTGACTAC 27090918 Query 24168 AACATTCAAAAAG 24180 ||||| || |||| Sbjct 27090917 AACATCCAGAAAG 27090905 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||||||||| || || || || || ||||| | || ||| ||||| |||||| Sbjct 5791517 GACAAAGAAGGCATACCACCAGACCAGCAAAGGCTGATCTTCGCCGGTAAGCAGCTCGAA 5791458 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || | | ||| | | |||||| ||||| || ||||| ||||| ||||| | || || Sbjct 5791457 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTTG 5791398 Query 24204 AG 24205 || Sbjct 5791397 AG 5791396 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| | || || || | || ||| |||| ||||| || Sbjct 29447026 AAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACAATAACCCTCGAGGTCGAATCC 29446967 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 29446966 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 29446907 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| ||||| ||||| || | | | | || ||| || Sbjct 29446906 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTAC 29446847 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 29446846 AACATCCAGAAGGAGTCTAC 29446827 >seq6 Length=32494073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | || ||| | || || ||| | | Sbjct 11637237 ATGCAGATCTTCGTCAAGACACTCACTGGGAAGACTATAACCCTAGAGGTGGAGAGCTCC 11637296 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| || || |||||||| ||||| ||||| Sbjct 11637297 GACACCATTGATAACGTCAAAGCTAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAG 11637356 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || | || || | || |||||||| || ||||| | | | | | ||| || || || Sbjct 11637357 CAACGTCTCATCTTCGCTGGCAAGCAGCTTGAAGACGGTCGCACCTT-AGCTGACTACAA 11637415 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||| || || || |||| || ||||| Sbjct 11637416 CATTCAAAAGGAGTCCACTCTTCACTTGGTGTT 11637448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429922664594475