Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 >seq3 Length=44396707 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || ||||| ||||| ||||| ||| |||| ||| | | Sbjct 19894564 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 19894505 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || ||| || ||| ||||| |||||| | ||| ||||| Sbjct 19894504 GACACCATCG-ACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCA 19894446 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | || || || || | ||||| | || |||| |||||||||| || Sbjct 19894445 GCAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGAACCCTGGCCGATTACAA 19894386 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || || || |||||| | || |||| Sbjct 19894385 CATCCAGAAGGAATCTACTCTCCACTTGGT 19894356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425330807025400