Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 seq3 98.7 7e-16 seq5 95.1 8e-15 seq1473 93.3 3e-14 seq6 93.3 3e-14 seq2 86.0 4e-12 seq1 86.0 4e-12 >seq8 Length=44809562 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||| | ||| || ||| |||||||||||| |||||||| | Sbjct 30326431 TACCACCACGGAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGAATGTTGTAATCCG 30326372 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || ||||| ||||| || || | ||| || || | | Sbjct 30326371 CAAGAGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGATGAGTCTTTGCTGGTCTGGTG 30326312 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||| ||| ||| ||||| | || || ||| || |||| Sbjct 30326311 GGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTGTCTGAGCTCTCAA 30326252 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| || | ||| || || || |||||||| Sbjct 30326251 CCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAAATCTGCAT 30326203 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||| | ||| || ||| ||||||||| || ||||| |||| Sbjct 30326203 TACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAG 30326144 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || || | || || || ||||| || || | || ||||| | | Sbjct 30326143 CGAGCGTGCGCCCATCCTCCAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGATCCGGTG 30326084 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||| ||| || || ||| ||||| | | || ||| || |||| Sbjct 30326083 GGATTCCCTCTTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAA 30326024 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| || | ||| || || || || ||||| Sbjct 30326023 CCTCCAAGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 30325975 >seq3 Length=44396707 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||| ||||| || ||| || ||||| |||||||||| Sbjct 19893880 TACCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCAG 19893939 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | |||| |||| || ||||||||||| || || | || || || | | Sbjct 19893940 CCAGTGTTCTGCCGTCCTCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGAG 19893999 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| || ||| ||| ||||| | | ||| ||| ||| || | Sbjct 19894000 GAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCTATAGTGTCTGAACTCTCCA 19894059 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| || || ||||| |||||||| Sbjct 19894060 CCTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAAATCTGCAT 19894108 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| ||||| |||||||| |||||| || || |||||||||| Sbjct 21554257 CCACCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCA 21554316 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| | || || | ||| ||||||||||| || | | || || || | ||| Sbjct 21554317 AGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 21554376 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| || || || || || | | ||||| || || || Sbjct 21554377 ATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACC 21554436 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || |||||||| ||||| || || ||||| Sbjct 21554437 TCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 21554483 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| || ||||| ||||| || ||||||||||| ||||| |||| Sbjct 19894108 TACCCCCACGTAGACGTAAGACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAG 19894167 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | ||| ||||| ||||| || | | || || || | | Sbjct 19894168 CAAGAGTACGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 19894227 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| ||| || || ||||| | || |||||| ||| || | Sbjct 19894228 GAATACCCTCCTTATCCTGAATCTTGGCTTTAACATTGTCGATGGTATCTGAACTCTCCA 19894287 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| ||||| || ||||| || || || || |||||||| Sbjct 19894288 CCTCCAAAGTAATGGTTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 19894336 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| ||||| || |||||| || || ||||| |||| Sbjct 19911474 CCACCACGAAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 19911533 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | || ||||| || || || || || || || || | ||| Sbjct 19911534 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 19911593 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| || || |||||| || | | || || || || || Sbjct 19911594 ATCCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTGTCCGAGCTCTCCACC 19911653 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||| || || ||||| |||||||| |||||||| || |||||| Sbjct 19911654 TCCAGTGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATG 19911701 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| ||||||||||||||||| |||||| ||||| |||||||| | | Sbjct 19911702 CCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTGCC 19911761 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||| || || || || || ||||| || || | ||| Sbjct 19911762 AAGGTGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGG 19911821 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || || ||||| |||||| || | | ||| || || || || Sbjct 19911822 ATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACC 19911881 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || || || || || | || || || || ||||||||| Sbjct 19911882 TCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCATG 19911929 >seq5 Length=39062406 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| ||||| |||||||| |||||| || || |||||||||| Sbjct 24281653 CCACCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCA 24281594 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| | || || | ||| ||||||||||| || | | || || || | ||| Sbjct 24281593 AGAGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 24281534 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| || || || || || | | ||||| || || || Sbjct 24281533 ATACCCTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACC 24281474 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || |||||||| ||||| || || ||||| Sbjct 24281473 TCCAAAGTGATAGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 24281427 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || |||||||||||| ||||| ||| ||||||||| |||||||| |||| | Sbjct 6898342 CCTCCACGCAGACGCAACACCAAGTGAAGCGTGGACTCCTTTTGGATATTGTAGTCAGCC 6898283 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| |||| || | || || ||||| || || | | || || || | ||| Sbjct 6898282 AAGGTACGACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 6898223 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| || || ||| || || | | || || || || || Sbjct 6898222 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 6898163 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||| || |||||||| || || || |||||||| Sbjct 6898162 TCTAGAGTGATTGTTTTTCCTGTCAAGGTCTTGACAAAGATCTGCAT 6898116 >seq1473 Length=1387316 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACA-CGTTCGTCGTCTAATTGTTTTCCGGCAA 38184 ||||||||| || || |||| | ||| | || | || || | |||||| || ||| Sbjct 1201398 CTCCTTTTGGATGTTATAATATG-CAAGCCTGCGACCATCCTCGAGTTGTTTACCATCAA 1201456 Query 38185 ATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACAT 38244 | || | | ||| | | | ||||| ||||| ||||| ||||||| ||| |||| Sbjct 1201457 ACATGATTCTCTGTAGGTTTGGGGGGATCCCTTCCTTGTCTTGAATTTTTGTCTTTACAT 1201516 Query 38245 TCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCA 38304 ||| ||| | || || ||||||||||| ||||| |||||||| || || ||||||| Sbjct 1201517 TCTCAACAATGTCGAAGCTGTCAACTTCTAAGGTAATGGTTTTACCGGTGAACGTTTTCA 1201576 Query 38305 CGAATATCTGCAT 38317 | ||||| ||||| Sbjct 1201577 CAAATATTTGCAT 1201589 >seq6 Length=32494073 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||| ||||| || ||||||||| || |||||||||| Sbjct 7251144 TACCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAG 7251203 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | ||| ||||||||||| || | | || || |||| | Sbjct 7251204 CGAGAGTACGCCCATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAG 7251263 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || ||| || || | | || || || || | Sbjct 7251264 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCA 7251323 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||| |||| || || || | || || ||||| |||||||| Sbjct 7251324 CCTCCAAAGTACTAGTCTTCCCGGTGAGTGTCTTAACGAAAATCTGCAT 7251372 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || |||||||||||| ||||||||| |||||||||||| ||||| |||| Sbjct 11637463 CCTCCACGCAGACGCAACACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT 11637404 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || |||| || | || || || || || || || ||||| ||||| | || Sbjct 11637403 AAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 11637344 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || ||| || || || || || | | || || || || || Sbjct 11637343 ATGCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCCACC 11637284 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| || || || | || || ||||| |||||||| Sbjct 11637283 TCTAGGGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 11637237 >seq2 Length=44367670 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||||||||| ||||| || |||||| ||||| ||||| |||| ||| || | Sbjct 25763785 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTGCGACCA 25763844 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || || || || || || || || || || | || | || |||||| Sbjct 25763845 TCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCTTTG 25763904 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| |||||| ||| || || | | || || || || ||||||| || || Sbjct 25763905 TCCTGAATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCACTTCTAGAGTGATG 25763964 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || || ||||||||||| Sbjct 25763965 GTCTTTCCTGTCAACGTCTTGACAAATATCTGCAT 25763999 >seq1 Length=30920229 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38196 TGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTA 38255 ||||||| | |||| ||||| ||||| ||| |||| ||| |||| || ||| | Sbjct 27436900 TGTTGATTTGGTGGGATCCCTTCCTTGTCTTGAATCTTTTCCTTTACATACTCAACAATG 27436959 Query 38256 TCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGC 38315 ||| || ||||||||||| ||||| ||||||| | || |||||||||||||| ||| Sbjct 27436960 TCTAAGCTGTCAACTTCTAAGGTAATGGTTTTACGACTGAATGTTTTCACGAATATTTGC 27437019 Query 38316 AT 38317 || Sbjct 27437020 AT 27437021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936810879895