Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8 129 7e-25 seq6 129 7e-25 seq7 114 2e-20 seq2470 100 4e-16 seq3 100 4e-16 >seq8 Length=44809562 Score = 129 bits (142), Expect = 7e-25 Identities = 386/586 (66%), Gaps = 10/586 (2%) Strand=Plus/Plus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || |||||||||||||| || || |||||||| || | |||||||| || Sbjct 36833120 ATCAGGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 36833179 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 || | || ||||| || || ||||| || ||||| || || || ||| | | | || || Sbjct 36833180 GTCAACCCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGA 36833238 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCGCTG 32831 ||||| || ||||| || ||| ||||| | | ||||| || || | || | Sbjct 36833239 GAAGAATATCCCTTCGACGCACGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGAC-- 36833296 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 ||| |||||| | ||||| | ||||||||| || || || || ||||| || Sbjct 36833297 CCATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATC 36833356 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || ||||||| || || || | || || | || || || | || || || Sbjct 36833357 GCGCGGAAGAGATGGTCCCGCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTG 36833416 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| || || || ||||| || || || || || || ||||||||| | |||||| Sbjct 36833417 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCG 36833476 Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | ||| || || | ||| || || || | ||| || || |||||||| Sbjct 36833477 GAGACCTGGACGTC-GGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGA 36833535 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 33129 ||| || || || || | || ||||| || || | || || | ||| || || | Sbjct 36833536 GGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCT 36833594 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| || | || | || | || ||||| || | ||||| || || ||||| | Sbjct 36833595 CCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGG 36833654 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 |||| || ||||| | |||||| | | | ||||| ||||| || || Sbjct 36833655 CCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAACAT 36833700 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||||| | || |||||||| |||||||||||| | ||| | | | Sbjct 25053513 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 25053572 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 25053573 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 25053632 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 25053633 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 25053692 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 25053693 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 25053740 >seq6 Length=32494073 Score = 129 bits (142), Expect = 7e-25 Identities = 258/376 (69%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || ||||| |||||||| || ||||||||||| || | |||||||| || Sbjct 29608545 ATCAGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAG 29608604 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 ||||| || ||||| || |||||||| || ||||| || || || ||| | | | || || Sbjct 29608605 GTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGA 29608663 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833 ||||| || ||||| || ||||| || | | ||||| || | ||| ||| Sbjct 29608664 GAAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCAAA---GGC-CTGAG 29608719 Query 32834 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || || |||||| | ||||| | ||||||||| || || || || ||||| | Sbjct 29608720 ATCCGTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGA 29608779 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || ||||||| | | || || |||| || | || ||||| | || |||| Sbjct 29608780 TCGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGAC 29608839 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 | ||||| || || || ||||| || || || || || || ||||||||| | |||| Sbjct 29608840 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 29608899 Query 33010 CGGTAATCTGTACTTC 33025 ||| | ||| || || Sbjct 29608900 CGGAGACCTGCACGTC 29608915 >seq7 Length=41685129 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | ||||||||||| |||||||||||| | ||| | || || Sbjct 5826531 AGTTCCTGAATTGAAGAGAGTAGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 5826472 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | |||||| || || || || || ||||| || || | ||| | ||| | Sbjct 5826471 GTAAGTTTGAATAGCGGAATCAATGTCTTGTTTGTGAATCCCAACAGAGACCCTCATGAG 5826412 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | | ||| | ||| || | ||| ||| | || | Sbjct 5826411 CATGTGCTGAGGCCTTTCAACAACTATCCCGTTGACTTTTAAGAGGTATGATCTCTCAAG 5826352 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 5826351 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 5826304 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 36269583 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 36269524 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || ||||| ||||| || || || || ||||| | ||||| || || || ||| Sbjct 36269523 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 36269464 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | |||||||||||| || |||| || | ||| || ||| || |||||||| || Sbjct 36269463 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATAT 36269404 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||| || ||||||||| ||||| Sbjct 36269403 TCCCTCAATGCTATCATCCTTCATG 36269379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | || || | || ||||| || |||||||||||| | ||| | | || Sbjct 36269254 AGTTCCTGAGTTGAAGAGAGTGGGAGACGCATGAGTAAACCATCGCTGAGACATCAAATG 36269195 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || || ||| || ||||| || || | || | ||| | Sbjct 36269194 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCAACAGAAACCCTCATGAG 36269135 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | || | | |||||| | ||| ||| | || | Sbjct 36269134 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCGAG 36269075 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| || ||| || || || ||||| || Sbjct 36269074 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 36269027 >seq2470 Length=950868 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||||| | || |||||||| |||||||||||| | ||| | | | Sbjct 185421 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 185362 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 185361 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 185302 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 185301 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 185242 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 185241 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 185194 >seq3 Length=44396707 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||||| | || |||||||| |||||||||||| | ||| | | | Sbjct 7812074 AGTTCCTGGGTTAAAGAGAGTTGGAGAAGCATGAGTAAACCATCGCTGAGACATCAATTG 7812133 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || ||||| || ||||| || || | ||| | ||| | Sbjct 7812134 GTAAGTTTGGATTGCAGAATCAATATCTTCTTTGTGAATCCCAACAGAGACCCTCATAAG 7812193 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | ||| | | |||||| | ||| ||| | || | Sbjct 7812194 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTCAAGAGGTATGATCTCTCAAG 7812253 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 7812254 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCGCGATCATAGATGAT 7812301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611842582000