Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq8 109 5e-19 seq2 109 5e-19 seq1473 91.5 1e-13 seq5 82.4 7e-11 >seq3 Length=44396707 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| |||| || | || |||||| || Sbjct 19894336 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 19894277 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || |||| || | ||| || || || || ||||| |||||| Sbjct 19894276 GATACCATCGA--CAATGTTAAAGCCAAGATTCA-GGATAAGGAGGGTATTCCTCCTGAC 19894220 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || ||| | ||||||| || ||| | | || ||| Sbjct 19894219 CAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTAC 19894160 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| ||||| || || || || || || | ||| | || || Sbjct 19894159 AACATTCAAAAGGAATCTACACTTCACTTGGTCTTACGTCTACGTGGGGG 19894110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | || || | || |||||| || Sbjct 19912156 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 19912097 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||||||| | || |||||||| || ||||| || ||| Sbjct 19912096 GACACCATTGA--CAATGTCAAAGCAAAGATCCAA-GACAAAGAGGGTATTCCTCCGGAC 19912040 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||||||||| || | || |||| | ||| | | || ||| Sbjct 19912039 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACTCTTGCTGACTAC 19911980 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || || || || | | ||| | ||||| Sbjct 19911979 AACATTCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGTCTACGTGGAGG 19911930 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | ||||| || ||||||| | || ||||| || Sbjct 21554939 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCC 21554880 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| || | || || || || || ||||| || || || Sbjct 21554879 GACACCATCGACAACGTTAAAGCCAAGATCCAG-GATAAGGAGGGCATTCCTCCGGATCA 21554821 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || ||||| || || || ||||||| | || | | |||||||| Sbjct 21554820 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGCAGGACCCTTGCTGATTACAA 21554761 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || ||||| || || || || || || ||||| Sbjct 21554760 TATCCAGAAGGAATCGACTCTCCACTTGGTCCTCAGGCT 21554722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || || |||||| | ||||| || ||||||| |||| ||||| Sbjct 19912617 AACAGATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAA 19912558 Query 25054 CGTCTGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || ||||| ||||| | | |||| || | || ||||| || || ||||| || Sbjct 19912557 GCTCCGACACCATCGACAACGTTAAAGCCAAGATCCAG-GACAAGGAGGGCATTCCCCCG 19912499 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||| || |||| || ||||| || || | || || | | || | | ||| Sbjct 19912498 GATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTCGCTGAT 19912439 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| || || || || || || ||| | || || ||||| Sbjct 19912438 TACAATATCCAGAAGGAGTCGACCCTTCATCTCGTCCTCAGGCT 19912395 >seq8 Length=44809562 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| ||||||| | || |||||| ||| Sbjct 30326431 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTGGAGAACTCT 30326490 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | ||||| | ||| ||||| ||||||||||| || || Sbjct 30326491 GACACGATTGACAACGTCA---AGGCAAAGATTCAG-GACAAGGAAGGGATTCCTCCGGA 30326546 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || || || ||||| | || |||| |||||| | | ||||| Sbjct 30326547 CCAGCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACGCTTGCGGATTA 30326606 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || ||||| || || || | ||||| Sbjct 30326607 CAATATTCAGAAGGAATCTACCCTTCACCTTGTGCT 30326642 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || || | ||||| ||| || Sbjct 30326659 ATGCAAATCTTTGTCAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 30326718 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| || || | ||| ||||| |||||||| || || ||||| Sbjct 30326719 GACACAATCGACAATGTGAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCGGACCA 30326777 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || || ||||| | || |||| | | ||| ||| |||||||| Sbjct 30326778 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 30326837 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 30326838 CATCCAGAAGGAGTCGACTCTTCACTTGGTTCT 30326870 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| |||| || || || Sbjct 30325747 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACCATCACCCTCGAGGTCGAAAGCTCC 30325806 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| || || || ||||| Sbjct 30325807 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 30325866 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| || ||||| || || |||| |||| | ||| | | || ||||| Sbjct 30325867 CAGAGGCTTATCTTCGCCGGGAAGCAGCTAGAGGATGGAAGGACTCTTGCTGACTACAAC 30325926 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || |||||||| || || || || Sbjct 30325927 ATCCAAAAAGAGTCGACACTCCA 30325949 >seq2 Length=44367670 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || |||||| ||| Sbjct 25764455 ATGCAGATCTTTGTCAAGACTTTGACGGGAAAGACGATCACTTTGGAGGTGGAGAGCTCT 25764396 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || || || ||||| ||||| ||||| Sbjct 25764395 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCGGACCAG 25764336 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || ||| | || |||| | ||| | | || ||||| Sbjct 25764335 CAGAGGTTGATCTTTGCCGGTAAGCAACTCGAGGATGGAAGAACTCTTGCTGACTACAAC 25764276 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || |||||| | || || ||||| Sbjct 25764275 ATTCAGAAGGAGTCAACTCTACATCTTGTTCTCAGGCT 25764238 >seq1473 Length=1387316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || || ||||||||| |||| || | ||||| || | Sbjct 1201590 AATGCAAATATTTGTGAAAACGTTCACCGGTAAAACCATTACCTTAGAAGTTGACAGCTT 1201531 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||| | | ||| | ||| |||||| ||| ||||| |||||||| || || ||| Sbjct 1201530 CGACATTGTTGAGAATGTAAAGACAAAAATTCA-AGACAAGGAAGGGATCCCCCCAAACC 1201472 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | || || |||| || |||||| | || |||| ||||| | | |||| | Sbjct 1201471 TACAGAGAATCATGTTTGATGGTAAACAACTCGAGGATGGTCGCAGGCTTGCATATTATA 1201412 Query 25177 ATATTCAAAAAGAATCCACGCT 25198 | || ||||| || || || || Sbjct 1201411 ACATCCAAAAGGAGTCGACCCT 1201390 >seq5 Length=39062406 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| | || ||||| || Sbjct 24280971 ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCC 24281030 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| || | || || || || || ||||| || || || Sbjct 24281031 GACACCATCGACAACGTTAAAGCCAAGATCCAG-GATAAGGAGGGCATTCCTCCGGATCA 24281089 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || ||||| || || || ||||||| | || | | |||||||| Sbjct 24281090 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGCAGGACCCTTGCTGATTACAA 24281149 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || ||||| || || || || || || ||||| Sbjct 24281150 TATCCAGAAGGAATCGACTCTCCACTTGGTCCTCAGGCT 24281188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314559384175