Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3 269 3e-67 seq4 145 9e-30 seq8 87.8 2e-12 >seq3 Length=44396707 Score = 269 bits (298), Expect = 3e-67 Identities = 445/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 167680 CAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCC 167739 |||| | || | || |||||||| |||||||| ||||| || || ||||| || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 167740 TCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATT 167799 || || || || ||||||||||| || |||||||| || || |||||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 167800 CCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGT 167859 | | || || | || || || ||||| ||| | || || | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 167860 TGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATAC 167919 ||| ||| | || |||| || || | | || || |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 167920 TCTGTA--TGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAA 167977 | | || |||| ||||||| ||||| | || || ||| | | | ||| | Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| |||||||| |||||||| || ||||| | ||| ||||| |||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGG 168097 || |||||| | |||||| || ||||||||| | || || || || | || | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 168098 ACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCT 168157 | ||| || ||| || | ||||| || | || || |||| |||| ||| | || Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 168158 CAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTC 168217 || ||| || | ||||| || ||||| || ||||||||||||| || ||||| || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 168218 CTCAATGAAGGACTCCGTGCCTGGAT---GGCTCCAGTAGACCAACCACATGAAAACTTT 168274 | || ||||| | || | ||||| ||||| | | || || ||||||||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 168275 GTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||||| | || || || || ||| | || | | |||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 24110541 >seq4 Length=32756842 Score = 145 bits (160), Expect = 9e-30 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 || |||| |||||| |||||| | || | | || ||||| |||| ||||||| || Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 ||||| || || |||||||| | || || ||| || |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 || ||| ||| | | ||||| || || ||| ||| || ||||||| ||| |||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 || ||||| ||||||||||| || |||||||| || || ||| | |||||||| |||||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 166621 TTCGGTGG 166628 ||||| || Sbjct 25314993 TTCGGCGG 25314986 >seq8 Length=44809562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 167492 TCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 167551 || ||||||||| | | | | |||||| | | ||| |||| |||||| | || Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 167552 GGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 167611 || ||||| | | ||||| || || || || | ||||||||||| || |||||| | Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 167612 GCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATC 167671 || || | | ||||| |||||| | | ||||||| | | || || | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAATTG 15118035 Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 || ||||| ||||| |||| || | ||||| |||| ||| ||||| || || ||||| Sbjct 15118036 CGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTA 15118095 Query 167732 ATCTATCCTCT 167742 || |||||||| Sbjct 15118096 ATTTATCCTCT 15118106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567213954932000