Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 5e-14 seq9 91.5 2e-13 seq8 91.5 2e-13 seq6 91.5 2e-13 seq32 87.8 2e-12 seq5 87.8 2e-12 seq2 87.8 2e-12 seq7 86.0 7e-12 seq1052 84.2 2e-11 seq4 84.2 2e-11 >seq3 Length=44396707 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/126 (78%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 43497805 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 43497862 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGGTTGGGACTTAA 126384 |||||| || |||||| ||| || ||| || || |||||||| || ||| || ||| Sbjct 43497863 GGGTTCAAATCCCACAGCTGTCAGATT-TTTTTTATATTTTTGT--CGACTGGAACATAA 43497919 Query 126385 ATAAAA 126390 | |||| Sbjct 43497920 AAAAAA 43497925 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 3732808 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 3732751 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| | || || |||||| Sbjct 3732750 TTCAAATCCCACAGCTGTCAATCTTTTTTTAAAATTTT 3732713 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 23039542 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 23039599 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 23039600 GCGTGGGTTCAAACCCCACTTCTGACA 23039626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 32676380 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 32676323 Query 126328 TTCGAACCCCACACCTGACAA 126348 ||| || |||||| ||| ||| Sbjct 32676322 TTCAAATCCCACAGCTGTCAA 32676302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 32256351 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 32256408 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| | || ||||||| Sbjct 32256409 TTCAAATCCCACAGCTGTC-AACTATTATT 32256437 >seq9 Length=3036023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2789520 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 2789463 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 2789462 GGGCGTGGGTTCAAATCCCACTTCTGACAA 2789433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 2203818 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 2203877 Query 126323 GTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||||| || ||||| ||||||| ||| || || Sbjct 2203878 GTGGGTTCAAATCCCACTTCTGACAACATTTTTTTT 2203913 >seq8 Length=44809562 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/118 (79%), Gaps = 9/118 (8%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 42431796 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 42431853 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTA-TTGGAATTTTTGTTGCGGTT 126375 |||||||||| || ||||| ||||| | ||| | || | ||||| ||| |||| Sbjct 42431854 GGGCGTGGGTTCAAATCCCACTTCTGAC--ACTATCAGTTTTATTTTTTTTTGTGGTT 42431909 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/105 (80%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 39609334 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 39609391 Query 126328 TTCGAACCCCACACCTGAC-AAATTATTAT-TGGAATTTTTGTTG 126370 ||| || |||||| ||| | ||||| |||| | |||||| ||| Sbjct 39609392 TTCAAATCCCACAGCTGTCAAAATTTTTATCTTTCATTTTTTTTG 39609436 >seq6 Length=32494073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 31152310 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 31152367 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 31152368 GGGCGTGGGTTCAAATCCCACTTCTGACAA 31152397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 18000399 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 18000456 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| | ||||||| || Sbjct 18000457 TTCAAATCCCACAGCTGTC-AATTATTTTT 18000485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 21095806 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 21095747 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||||| || || || Sbjct 21095746 GTGGGTTCAAATCCCACTTCTGACAATTTTTTTTT 21095712 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 25741406 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 25741463 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 25741464 TTCAAATCCCACAGCTGTCATATTTTT 25741490 >seq32 Length=57195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 25546 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 25489 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAA 126348 || ||||||| || ||||| ||||||| Sbjct 25488 GGGCATGGGTTCAAATCCCACTTCTGACAA 25459 >seq5 Length=39062406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 8155488 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 8155431 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 8155430 GCGTGGGTTCAAACCCCACTTCTGACAA 8155403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 32246212 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 32246269 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| |||||| Sbjct 32246270 GGGTTCAAATCCCACAGCTGTCAAATT 32246296 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 38430699 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 38430642 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 38430641 GCGTGGGTTCAAATCCCACTTCTGACA 38430615 >seq2 Length=44367670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 35252852 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 35252795 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || |||||| ||| || ||| || Sbjct 35252794 GTGGGTTCAAATCCCACAGCTGTCATATTTTT 35252763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 37746827 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 37746884 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 37746885 GCGTGGGTTCAAATCCCACTTCTGACAA 37746912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 19585696 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 19585753 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 19585754 GCGTGGGTTCAAACCCCACTTCTGACAA 19585781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 38554436 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 38554377 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| || ||||| Sbjct 38554376 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATT 38554342 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 29786034 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 29786091 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 29786092 CGTGGGTTCAAATCCCACTTCTGACAA 29786118 >seq7 Length=41685129 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/94 (81%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 36920750 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 36920693 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || |||| |||||| |||||| Sbjct 36920692 GCGTGGGTTCAAATTCCACTTCTGACACATTATT 36920659 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 16305049 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16305106 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 16305107 TTCAAATCCCACAGCTGTCATATTTTT 16305133 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/103 (79%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 29444100 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 29444159 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||| || ||||| ||||||| || | ||| |||||| Sbjct 29444160 TGGGTTCAAATCCCACTTCTGACAATTTTGTTTTG--ATTTTT 29444200 >seq1052 Length=282848 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/95 (81%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | ||||| ||| | | |||| Sbjct 13524 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCCGTTAAGGGCGT 13466 Query 126325 GGGTTCGAACCCCACACCTGACAA--ATTATTATT 126357 |||||| | |||||| ||| ||| ||| ||||| Sbjct 13465 GGGTTCACATCCCACAGCTGTCAACTATTTTTATT 13431 >seq4 Length=32756842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 5580258 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 5580201 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| ||| |||| || |||||| Sbjct 5580200 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTATATTTTT 5580161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843084865800