Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq8 100 2e-16 seq2 95.1 9e-15 seq6 84.2 2e-11 >seq3 Length=44396707 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || ||||||||||| |||| ||| || Sbjct 19894336 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 19894277 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| ||||| |||||| | ||| |||| Sbjct 19894276 GATACCATCGACAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 19894217 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||||| |||||| ||| | || || ||||| Sbjct 19894216 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 19894157 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||||||||| ||||| |||| |||||| |||| || || Sbjct 19894156 ATTCAAAAGGAATCTACACTTCACTTGGTCTTACGTCTACGTGGGGG 19894110 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || ||||| || || ||||| |||| ||| | | Sbjct 19912156 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 19912097 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| || || ||||||||| | ||| |||| Sbjct 19912096 GACACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 19912037 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| ||||| || || || ||| || |||| | || || ||||| Sbjct 19912036 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACTCTTGCTGACTACAAC 19911977 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| |||||||| || |||| || ||| |||| ||||| Sbjct 19911976 ATTCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGTCTACGTGGAGG 19911930 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| || | || ||||| ||||||||||| || || ||| || |||| |||| Sbjct 19911813 ACCAGCAACGTCTCATCTTCGCTGGCAAACAGCTCGAGGATGGTCGCACCTTGGCAGATT 19911754 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| ||||||||||| || ||||||||| |||| |||||| | || ||||| Sbjct 19911753 ACAACATTCAGAAGGAGTCAACTCTTCATTTGGTGTTACGTCTGCGTGGAGG 19911702 >seq8 Length=44809562 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || ||||| || || ||| ||||| || | || Sbjct 30326659 ATGCAAATCTTTGTCAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 30326718 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || || | ||| ||||| Sbjct 30326719 GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 30326778 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| | ||| |||| |||||||| Sbjct 30326779 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAAC 30326838 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || |||||||| |||| | ||| | || || ||| Sbjct 30326839 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGA 30326886 >seq2 Length=44367670 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||||||||| ||||| || || || || |||| || | | Sbjct 25764227 ATGCAGATTTTTGTTAAAACATTGACGGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 25764168 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || || || ||||||||| | || |||| Sbjct 25764167 GACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 25764108 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || ||||| ||||| || ||| | ||| | || |||||||| Sbjct 25764107 CAGAGGTTGATCTTCGCAGGCAAGCAACTCGAGGATGGACGTACTCTTGCTGATTACAAC 25764048 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||||||||| |||| || ||| |||| ||||| Sbjct 25764047 ATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTACGTGGAGG 25764001 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || || || ||||| || | ||| ||| | | Sbjct 25763999 ATGCAGATATTTGTCAAGACGTTGACAGGAAAGACCATCACTCTAGAAGTGGAGAGCTCC 25763940 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| |||||| || ||||||||| | ||| | |||| Sbjct 25763939 GACACCATAGACAACGTCAAGGCCAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 25763880 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||| ||||| || || || || ||| || |||| || ||||| Sbjct 25763879 CAGCGTCTCATCTTCGCTGGGAAGCAGCTCGAGGATGGTCGCACCTTGGCTGACTACAAC 25763820 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || ||||| |||| || || |||| ||||| Sbjct 25763819 ATTCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGACTACGTGGAGG 25763773 >seq6 Length=32494073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | | |||||||| || ||||||||||| ||||||||||| Sbjct 1228635 GACAAAGAGGGGATACCACCAGATCAACAGAGGCTCATCTTTGCTGGGAAACAACTAGAG 1228694 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| |||| || ||||| || ||||| || || |||||||| |||| || Sbjct 1228695 GATGGCCGAACGCTGGCTGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCTT 1228753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358113691975930