Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 288 2e-72 seq6 260 3e-64 >seq8 Length=44809562 Score = 288 bits (318), Expect = 2e-72 Identities = 457/650 (70%), Gaps = 18/650 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| ||||||||||||||| | ||||| Sbjct 36833676 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 36833617 Query 42360 GCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 || ||||||| || ||||||| ||| | | |||| || | ||| |||| Sbjct 36833616 TCCCAGGACACACGCGACTGGGAGAATCTCAACGACGGAGAGCGCCAC----TTCATCAA 36833561 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | || | || ||||||||||||||||| ||||| || ||| ||||| || ||| | | Sbjct 36833560 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCTCG 36833501 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||||| || || ||| || ||||||||| ||||||||| |||||||| || || Sbjct 36833500 GTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCGAT 36833441 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||||| | ||| | ||||||||||| ||| | Sbjct 36833440 CGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGACACGTACATCAAGGACAACAA 36833381 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 ||||| || || ||| || || ||||| || |||||| || ||||||||| | Sbjct 36833380 GGAGCGGGACCATCTCTTCCGCGCGATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCA 36833321 Query 42656 CTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||| | | |||||||| | ||||| || || | ||||||| | || |||| Sbjct 36833320 ATGGGCCATGACGTGGATCGATGGGTCCC----AGACTTTTGCCGAGAGGATCGTGGCCT 36833265 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | |||||| || || |||||||| || |||| ||| ||||||||||| ||| Sbjct 36833264 TCGCGTGCGTCGAAGGGATATTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTGAAGA 36833205 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| || ||||| || | |||||||| ||||| || ||| || ||||| || Sbjct 36833204 AGCGAGGGCTC-ATGCCTGGGTTGACCTTCTCCAACGAGCTGATCTCGAGAGACGAAGGC 36833146 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 ||||| | || || || || |||| ||| | || ||| ||| |||| | || || Sbjct 36833145 CTGCACTGCGATTTCGCGTG---CCTGATCTACACCCTCCTGAGGACGAAGCTCACGGAG 36833089 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||||| || | | ||| | || |||||||||||||||| |||||| Sbjct 36833088 GAGCGCGTGAAGTCGATCGTGTGCGACGCCGTGGAGATCGAGAGGGAGTT 36833039 >seq6 Length=32494073 Score = 260 bits (288), Expect = 3e-64 Identities = 498/730 (68%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| ||||||||||||||| | ||||| Sbjct 29609104 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 29609045 Query 42360 GCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 || | ||| | || ||||||| ||| | | |||| || | ||| | Sbjct 29609044 TCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAGCGACGGAGAGCGCCAC----TTCGT 29608989 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || ||||||||||||||||| ||||| || ||| |||||||| ||| | Sbjct 29608988 CAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAACCTCGCCTC 29608929 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 |||||||| || |||||| || ||||| ||| ||||||||| |||||||| || Sbjct 29608928 TCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGC 29608869 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| ||| ||||| ||| | | || |||||| |||| Sbjct 29608868 GATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTTAGATACTTACATCAAGGATAA 29608809 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 ||| | | || ||| || || |||||||| |||||| || ||||||||| Sbjct 29608808 TAGAGAGAGGGATCATCTCTTCCGCGCGATCGAGACGATCCCCTGCGTCGCGAAGAAGGC 29608749 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 | ||||| | | |||||||| | | | || || | ||||||| | || || Sbjct 29608748 CCAATGGGCCTTGACGTGGATCGACGGATCTCAGGCC---TTTGCCGAGAGGATCGTGGC 29608692 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||| || || || |||||||| || |||| ||| ||||||||||| || Sbjct 29608691 GTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTGAA 29608632 Query 42773 GCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | || | | ||||| || ||||||||||| ||||| || ||| || |||||||| Sbjct 29608631 GAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGG 29608572 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA 42892 ||||| | ||||| || ||||| | | ||| || ||| ||| |||| |||| | Sbjct 29608571 CCTGCACTGCGACTTCGCGTGCCTGATCTACTC---CCTCCTGAGGACGAAGCTCTCGGA 29608515 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 |||||| || || | ||| | || || ||||||||||||| |||||| | | Sbjct 29608514 GGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGA 29608455 Query 42953 GTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 |||| |||||| | |||| || ||||||| || || ||| | |||| || ||| Sbjct 29608454 CGCGCT-CCCGTGCGCGTTGGTGGGGATGAACCGTGAACTGATGAGTCAGTATATTGAGT 29608396 Query 43012 ACGTCGCCGA 43021 ||| || || Sbjct 29608395 TCGTGGCGGA 29608386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309158209200