Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq8 104 2e-17 seq9 102 7e-17 >seq2 Length=44367670 Score = 105 bits (116), Expect = 6e-18 Identities = 186/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || |||||||||||||| || || | | Sbjct 42352560 ACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 42352619 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| |||||||| || | || || ||||| Sbjct 42352620 CCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCAACGTAAAAC 42352679 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||| |||||| | | ||| | || ||||| ||| Sbjct 42352680 TGAGCAAACATGTGGCATGGAGGAAGTGCCATCGCCTTAAGGTCAGAAGGATTCCAAGCA 42352739 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 |||| || || | | ||||| ||||| || || || | | | || | | Sbjct 42352740 GACATTATAATCCGCCGATCGTCAGGATTGTTCTTGATCTTGTTAATTACGTCTAAGAGC 42352799 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| ||||| ||||||| Sbjct 42352800 TGATCAAATCCTTGGCCGGTATAATCAGCAT 42352830 >seq8 Length=44809562 Score = 104 bits (114), Expect = 2e-17 Identities = 217/321 (68%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 20197 GTGGGCATCTCCCAACGTG-TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAA 20255 ||| ||||| ||||| | || ||||| || || || |||| || |||||||| | Sbjct 4273075 GTGAGCATC-CCCAATGACATGGATAAAATCACCAGGAACAAGATCACACACATGAGCTA 4273017 Query 20256 GCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTC 20315 |||| | || | || || || ||||||||||| || || || | ||||| || Sbjct 4273016 GCATGCAGGTAAGAAGAGAGTAAGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCG 4272957 Query 20316 CCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACA 20375 | || | |||||||| ||||| || ||||| || || || ||||| || || |||| Sbjct 4272956 CTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCCGCCACATAGAACTGTGCGAACA 4272897 Query 20376 AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGA 20435 ||| || || ||||||||||||||| | || | |||||||| || | | |||| Sbjct 4272896 TGTGGCATGGAGGAAGCGCCATCAACTTGAGATCAGAAGGGTTCCAAGCCGATAGTATGA 4272837 Query 20436 TTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACC 20495 | | | ||| | ||||| || || || || | | || | || ||||| | Sbjct 4272836 TACGCCGATCATCAGGATTGTTCTTGATCTTTTCGATTACGTCTAGGAGCTGATCAAATC 4272777 Query 20496 CCTGGCCTGTATAGTCAGCAT 20516 | ||||| ||||| ||||||| Sbjct 4272776 CTTGGCCGGTATAATCAGCAT 4272756 >seq9 Length=3036023 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || ||||| |||||||||||| || || || | | Sbjct 55016 ACATGAGCGAGGATGCATGTAAGAAGCGAATATGAGGCAATGTTAAACGGTACACCAAGA 54957 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||||||| | || | |||||||| ||||| |||||||| || | || |||||||| Sbjct 54956 CCCATGTCTGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATATGCAACATAAAAC 54897 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || |||| ||| || || ||||| ||||||| Sbjct 54896 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCA 54863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441358758827800